KEGG   Methanocella paludicola: MCP_2028
Entry
MCP_2028          CDS       T01142                                 
Name
(GenBank) conserved hypothetical protein
  KO
K14415  tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
Organism
mpd  Methanocella paludicola
Brite
KEGG Orthology (KO) [BR:mpd00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:mpd03016]
    MCP_2028
Enzymes [BR:mpd01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     MCP_2028
Transfer RNA biogenesis [BR:mpd03016]
 Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    MCP_2028
 Prokaryotic type
   tRNA splicing ligases
    MCP_2028
SSDB
Motif
Pfam: RtcB
Other DBs
NCBI-ProteinID: BAI62100
NITE: MCP_2028
UniProt: D1Z078
LinkDB
Position
complement(2035682..2037121)
AA seq 479 aa
MVAADKLKKISEDVWEIPTDYKPGMNVPGHIFLSDRLIEGLESGAIDQTANVATLPGIQR
YSMAMPDVHIGYGFPIGGVAAFDTETGVISPGGVGFDINCGVRLLRSELMADDVKPHKVD
LINALYEAVPSGLGSESKFRVNDAQLAEVFRTGARWAVENGYGVKADLEHCEENGEMKGA
DPAKVSKKARDRGRPQLGTLGSGNHFLEIQKVEKIYDEAVAKAFGLKEGQVTVMIHCGSR
GAGHQICTDYVKTMEQASRKYGIKLYDRQLACAPLSSPEAKDYFAAMAAGANYAWANRQI
ISHWVREAFSKYYKRDVRMDLVYDVAHNVAKFEEHEVDGVKKALCVHRKGATRAFAPGRS
EVPVAYRDVGQPVIIPGSMGSASYVLAGTQRGMELTFGSTCHGAGRVMSRSAALKDIRGN
EVKRQLLERGIVVKAPKDAAIAEEAPEVYKEIDEVIAVVDGLGISKKVARLVPIAVAKG
NT seq 1440 nt   +upstreamnt  +downstreamnt
atggtagctgcggataagctaaagaagatctccgaggacgtctgggagatccctactgat
tacaagcccggcatgaacgtgccagggcacatctttttatcggaccggctgatcgagggc
ctggagagcggcgccatcgaccagacggcgaacgtggcgacgctgccgggcatccagagg
tactcgatggccatgcccgacgtgcacatcggctacggcttccccatcggcggcgtggca
gccttcgacacggagacgggcgtgatcagccccggcggtgtcggcttcgacatcaactgc
ggcgtgcgcctcctgcgctcggaattaatggccgacgatgtcaagccccataaggtcgac
cttatcaacgctttatacgaggcggtcccctcgggcctgggctcggagtcgaagttccgc
gtgaacgatgcccagctcgccgaagtcttccgtaccggggcccggtgggccgtggagaac
ggctatggcgtgaaggcggacctggagcactgcgaagagaacggagagatgaagggcgcc
gaccccgcgaaagtatctaagaaggccagggaccggggcaggccccagctgggcactctt
ggcagcggcaatcactttttagagatccagaaggtcgaaaagatctacgacgaggccgtg
gcgaaggcgttcggcctgaaagagggccaggtcaccgtcatgatccactgcggctcccgc
ggcgccggccaccagatctgtaccgattatgtaaaaacgatggagcaggcctccaggaaa
tacggcataaagctctatgaccggcagctagcctgcgcaccgctttcctcgcccgaggcg
aaggactatttcgccgccatggccgcgggcgccaactacgcgtgggcgaaccgccagatc
atatcgcactgggtgcgggaagcgttcagtaaatactataagcgggacgtcaggatggat
ttagtttacgatgtcgcccataatgtggccaagttcgaggagcacgaggtggacggcgtc
aagaaggcgctgtgcgtacaccgcaagggcgccacccgggctttcgcccccggccgctcc
gaggtacctgtcgcctacagggacgtaggccagccagtgatcatcccgggcagcatgggc
agcgcctcttatgtgctcgccggcacgcagaggggcatggagctcaccttcggtagcacc
tgccatggggcaggacgagtcatgagccgcagcgcagccctgaaggacatccgcggcaat
gaggtaaagcggcaactgctggagcgaggcatcgtcgtgaaggcgccaaaggatgcagcc
atcgccgaagaagcccccgaagtctacaaggagatcgacgaagtcatcgccgtcgtggac
gggctgggcatttccaaaaaggtcgcccggctcgtgcccatcgcggtagcgaagggatag

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