Methanocella paludicola: MCP_2028
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Entry
MCP_2028 CDS
T01142
Name
(GenBank) conserved hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mpd
Methanocella paludicola
Brite
KEGG Orthology (KO) [BR:
mpd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mpd03016
]
MCP_2028
Enzymes [BR:
mpd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
MCP_2028
Transfer RNA biogenesis [BR:
mpd03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
MCP_2028
Prokaryotic type
tRNA splicing ligases
MCP_2028
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
BAI62100
NITE:
MCP_2028
UniProt:
D1Z078
LinkDB
All DBs
Position
complement(2035682..2037121)
Genome browser
AA seq
479 aa
AA seq
DB search
MVAADKLKKISEDVWEIPTDYKPGMNVPGHIFLSDRLIEGLESGAIDQTANVATLPGIQR
YSMAMPDVHIGYGFPIGGVAAFDTETGVISPGGVGFDINCGVRLLRSELMADDVKPHKVD
LINALYEAVPSGLGSESKFRVNDAQLAEVFRTGARWAVENGYGVKADLEHCEENGEMKGA
DPAKVSKKARDRGRPQLGTLGSGNHFLEIQKVEKIYDEAVAKAFGLKEGQVTVMIHCGSR
GAGHQICTDYVKTMEQASRKYGIKLYDRQLACAPLSSPEAKDYFAAMAAGANYAWANRQI
ISHWVREAFSKYYKRDVRMDLVYDVAHNVAKFEEHEVDGVKKALCVHRKGATRAFAPGRS
EVPVAYRDVGQPVIIPGSMGSASYVLAGTQRGMELTFGSTCHGAGRVMSRSAALKDIRGN
EVKRQLLERGIVVKAPKDAAIAEEAPEVYKEIDEVIAVVDGLGISKKVARLVPIAVAKG
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atggtagctgcggataagctaaagaagatctccgaggacgtctgggagatccctactgat
tacaagcccggcatgaacgtgccagggcacatctttttatcggaccggctgatcgagggc
ctggagagcggcgccatcgaccagacggcgaacgtggcgacgctgccgggcatccagagg
tactcgatggccatgcccgacgtgcacatcggctacggcttccccatcggcggcgtggca
gccttcgacacggagacgggcgtgatcagccccggcggtgtcggcttcgacatcaactgc
ggcgtgcgcctcctgcgctcggaattaatggccgacgatgtcaagccccataaggtcgac
cttatcaacgctttatacgaggcggtcccctcgggcctgggctcggagtcgaagttccgc
gtgaacgatgcccagctcgccgaagtcttccgtaccggggcccggtgggccgtggagaac
ggctatggcgtgaaggcggacctggagcactgcgaagagaacggagagatgaagggcgcc
gaccccgcgaaagtatctaagaaggccagggaccggggcaggccccagctgggcactctt
ggcagcggcaatcactttttagagatccagaaggtcgaaaagatctacgacgaggccgtg
gcgaaggcgttcggcctgaaagagggccaggtcaccgtcatgatccactgcggctcccgc
ggcgccggccaccagatctgtaccgattatgtaaaaacgatggagcaggcctccaggaaa
tacggcataaagctctatgaccggcagctagcctgcgcaccgctttcctcgcccgaggcg
aaggactatttcgccgccatggccgcgggcgccaactacgcgtgggcgaaccgccagatc
atatcgcactgggtgcgggaagcgttcagtaaatactataagcgggacgtcaggatggat
ttagtttacgatgtcgcccataatgtggccaagttcgaggagcacgaggtggacggcgtc
aagaaggcgctgtgcgtacaccgcaagggcgccacccgggctttcgcccccggccgctcc
gaggtacctgtcgcctacagggacgtaggccagccagtgatcatcccgggcagcatgggc
agcgcctcttatgtgctcgccggcacgcagaggggcatggagctcaccttcggtagcacc
tgccatggggcaggacgagtcatgagccgcagcgcagccctgaaggacatccgcggcaat
gaggtaaagcggcaactgctggagcgaggcatcgtcgtgaaggcgccaaaggatgcagcc
atcgccgaagaagcccccgaagtctacaaggagatcgacgaagtcatcgccgtcgtggac
gggctgggcatttccaaaaaggtcgcccggctcgtgcccatcgcggtagcgaagggatag
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integrated database retrieval system