KEGG   Mycolicibacterium phlei: MPHLCCUG_01936Help
Entry
MPHLCCUG_01936    CDS       T04305                                 

Definition
(GenBank) Putative DNA ligase-like protein
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
mphl  Mycolicibacterium phlei
Pathway
mphl03030  DNA replication
mphl03410  Base excision repair
mphl03420  Nucleotide excision repair
mphl03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mphl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    MPHLCCUG_01936
   03410 Base excision repair
    MPHLCCUG_01936
   03420 Nucleotide excision repair
    MPHLCCUG_01936
   03430 Mismatch repair
    MPHLCCUG_01936
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mphl03032]
    MPHLCCUG_01936
   03400 DNA repair and recombination proteins [BR:mphl03400]
    MPHLCCUG_01936
Enzymes [BR:mphl01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     MPHLCCUG_01936
    6.5.1.6  DNA ligase (ATP or NAD+)
     MPHLCCUG_01936
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     MPHLCCUG_01936
DNA replication proteins [BR:mphl03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    MPHLCCUG_01936
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     MPHLCCUG_01936
DNA repair and recombination proteins [BR:mphl03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     MPHLCCUG_01936
   NER (nucleotide excision repair)
    Other NER factors
     MPHLCCUG_01936
   MMR (mismatch exicision repair)
    Other MMR factors
     MPHLCCUG_01936
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_A_N RNA_ligase
Motif
Other DBs
NCBI-ProteinID: AMO60756
LinkDB All DBs
Position
complement(2000322..2001863)
Genome map
AA seq 513 aa AA seqDB search
MLLLDVATASADVGASSSRLTKTARIAETLRQAADDPEQVAIVVSWLSGELPQRQIGVGW
AALRSLPAPAATPTLTVPAVHARFSEIKEVAGKGSQARRAALVADLFGAATDVEQTFLRR
LLSGELRQGALVGVMADAVAKAADLPAAAVRRAAMLGGNLPAVAAAALTEGAAGLARFTL
TVGRPVGPMLAQTATGVADALERLGGTAVLEAKLDGARVQVHRSGDTVAIYTRSLDDVTA
RLPEVVDAALALPVTELIADAEAIALRPDGRPHRFQVTASRFGRSVDIAAAAAVQPLSVF
VFDLLHVDGTDLLDMPTRERIAVLDELVPDRHRVDRLITDDPTSAEDFLRRTLAAGHEGV
MAKSPTAPYEAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRTGKLSNIHLGARDPRTGGF
VMLGKTFKGMTDAMLEWQTARFLELADGPTDGYVVRVRPEQVVEIAFDGIQTSTRYPGGM
ALRFARVVRYRDDKTAAEADTVNTVRQIYERAD
NT seq 1542 nt NT seq  +upstreamnt  +downstreamnt
gtgctgctgctcgacgtcgccaccgcctccgccgacgtgggcgcatcgtcgtcgcggctg
accaagaccgcccgcatcgccgagacgctgagacaggccgccgacgacccggagcaggtt
gcgatcgtcgtctcctggctgtccggcgaactgccgcagcgtcagatcggggtcggttgg
gccgcgctgcgctcgctgccggccccggcggcgacgccgacgctgaccgtgccggccgtg
cacgcccggttcagcgagatcaaggaggtcgcgggtaaggggtcgcaggcccggcgcgcg
gccctggtcgccgacctgttcggcgccgccaccgacgtcgagcagaccttcctgcgccgc
ctgctcagcggcgagctgcgccagggcgccctggtcggcgtgatggccgacgccgtcgcc
aaggccgccgacctgccggccgccgcggtgcgccgcgccgccatgctgggcggcaacctg
cccgccgtcgccgccgcggccctgaccgaaggcgcggccgggctcgcccggttcacgctc
accgtcggccgccccgtcggcccgatgctcgcccagaccgccaccggcgtggccgatgcg
ctcgaacggctcggcggcacagccgttctggaggccaagctggacggtgcccgggttcag
gtgcaccgcagcggcgacaccgtggcgatctacacccgcagcctcgacgacgtgaccgcc
cggctgcccgaggtcgtcgacgccgcgctcgccctgccggtcaccgagctgatcgccgac
gccgaggcgatcgcactgcgccccgacgggcgcccgcaccgcttccaggtcaccgcgtcc
cggttcggccgctccgtcgacatcgccgccgccgcggcggtccagccgctgtcggtgttc
gtgttcgacctgctgcacgtcgacggcaccgatctgctggacatgccgacccgcgagcgc
atcgcggtgctcgacgagctggtgcccgaccggcaccgcgtcgaccgtctgatcaccgac
gatccgacgtccgccgaggacttcctgcggcggacgctggccgccggccacgagggtgtg
atggcgaagtcgccgacggcgccctacgaggccggccgccgcggcgcgggctggctgaag
gtcaaaccggtgcacaccctcgacctggtcgtgctggccgtcgagtgggggtcaggccgg
cgcaccggcaagctgtcgaacatccatctcggcgcccgcgacccgcggaccggcggattc
gtcatgctcggcaagacgttcaagggcatgaccgacgcgatgctggagtggcagacggcg
cgcttcctggaactggccgacggtcccaccgacggatacgtggtcagggtgcgccccgag
caggtcgtcgagatcgcgttcgacggcatccagacctcgacgcgctacccgggtgggatg
gcgctgcggtttgcccgggtggtgcgctaccgcgacgacaagaccgccgccgaggccgac
accgtcaacaccgtgcgccagatctacgaacgcgccgactga

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