Microcystis panniformis: VL20_6176
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Entry
VL20_6176 CDS
T04037
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
mpk
Microcystis panniformis
Pathway
mpk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VL20_6176
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpk03019
]
VL20_6176
03400 DNA repair and recombination proteins [BR:
mpk03400
]
VL20_6176
Enzymes [BR:
mpk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VL20_6176
Messenger RNA biogenesis [BR:
mpk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VL20_6176
DNA repair and recombination proteins [BR:
mpk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
VL20_6176
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HTH_40
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
HTH_11
HTH_28
HTH_5
HTH_20
TrmB
MarR
TnsD
HTH_24
HTH_36
HTH_29
GH18_BT1044-like
DUF5750
Motif
Other DBs
NCBI-ProteinID:
AKV70939
UniProt:
A0A0K1S9Z4
LinkDB
All DBs
Position
5390741..5392852
Genome browser
AA seq
703 aa
AA seq
DB search
MAAIDSLEKVLKYHFGYDQFRPNQRQIIEAALNNQDLLVIMPTGGGKSLCFQLPALIKKG
VTVVVSPLIALMQDQVTALADNGIGATFLNSTLNAKQVRERESLILQGKIKLLYVAPERL
LSPSFLDFLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQVRQRFPSAPILALTA
TATQQVREDIIQQLGLRDTSIHIASFNRPNLYYEVRSKTSKSYQQLYQYIKGQKGSGIVY
CISRKTVDKVAEQLQKDGIDALPYHAGMDDRERSENQTRFIRDDVQIMVATIAFGMGINK
PDVRFVVHYDLPRNLEGYYQESGRAGRDGEPAKCTLFFSFADARKIEYFINQKTEQNEQQ
KARQQLRQVLDYAEGTECRRSSVLGYFGESFSGNCGNCDNCRNGNNSEDWTIEAQKFLSC
VARTGQKFGMMHIINVLRGGKGERITQYQHHLLSTYGIGKDKTVGEWKRLSRSLVQQNLL
VETEDNFRILKLNQNSWEVMRKQRSVFIAVPQKANGQILGDDNPNTLESDLLFERLRQLR
KKIADSQGVPPYVIFHDSSLRLMAQSKPRSLGEFRQISGVVQSKVQQYGDIFIAAINDFC
QDSLPSTQFLTLQYYQDGLNAEEIARKRSLKVSTIYEHLAKLLEAGYEIDINQLVSKNKQ
EYIRLAIKKVGDQSLKTLKENLGDNYSYEEIKLVVAWQRRPRQ
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atggctgcaattgactctttagaaaaagtcttaaaatatcactttggctacgatcaattt
cgaccgaatcaacgccaaataattgaggctgctttaaataatcaggatttattagtaatt
atgcccactggaggcggtaaatctctctgttttcagctacctgctttaatcaaaaaaggg
gtgacggtggtggtttctcccctaattgctttaatgcaggatcaagtaactgctttagct
gataatggcatcggggcaacatttctcaatagcactttaaatgctaaacaagtcagagaa
agagaatctttaatcctgcaaggaaaaattaaactgttatatgtcgcgccagaaagatta
ttatcgcctagttttttagattttttagctgttattgataattaccttggtttagcctgt
ttagcggtagatgaagctcactgtgtctccgattggggtcatgattttcgccctgaatat
cgacaaattaaacaagttcgtcaacgctttccctctgcaccaattctggctttaactgcc
accgctacccaacaggttagggaagatattatccaacaattaggattgcgagatacttcc
attcatattgctagttttaatcgtcctaatctttattatgaagttcgatctaaaaccagt
aaatcttatcagcaattgtatcaatatattaaaggacaaaaaggatcaggaatagtttac
tgtatcagccggaaaaccgtcgataaagttgccgaacagttacaaaaagatggtattgat
gccctaccctatcacgccggtatggatgatcgggaaagaagcgaaaatcaaacccgtttt
attcgggatgatgtgcagattatggtggcaacaattgccttcggtatggggattaataaa
ccagatgtgcgctttgtcgttcattatgatttaccccgcaatttagagggatattatcaa
gaatcgggccgcgccggtagggacggagaaccggctaaatgtaccctcttttttagcttt
gcagatgccagaaaaattgagtattttattaaccaaaaaaccgagcaaaatgaacaacag
aaagctcgtcaacaattgcgacaggtgttagattatgccgaagggactgaatgcagaaga
tcgagtgtactaggctactttggcgaaagtttttcaggtaactgtggtaactgtgataac
tgtcggaatggtaacaattccgaggattggacaatcgaggcacaaaaatttttatcctgt
gtggcgcggacgggacaaaaattcggtatgatgcacataatcaacgtgctgaggggagga
aaaggtgaaagaatcacccaatatcaacatcatttattatctacttatggcatcggtaaa
gataaaactgtcggggagtggaaacgtttaagtcgttcccttgtccagcaaaatctactg
gtagaaactgaagacaattttagaatcttgaaacttaatcaaaacagttgggaagtgatg
cggaaacaacgttccgtgtttattgctgtcccccaaaaagctaacggtcaaatcttggga
gacgacaatcccaatacgctggaaagtgatttattattcgagcgcttgcgacaactgcgg
aaaaaaattgccgatagtcaaggggttcctccctacgttatttttcatgattctagtctg
cgtttgatggctcaatcaaaaccccggagtttaggggagtttcgtcaaatttctggagta
gtacaaagcaaagtgcagcagtatggtgatatatttatagcggcaattaatgatttttgt
caggatagtcttccctctactcaattcctcactctccaatactatcaagatggtttgaat
gcggaagaaatcgctcgcaaaagaagcttaaaagtctcaaccatctatgaacatttagct
aaattgctggaagcgggttacgaaattgatattaatcagttagtctctaaaaataaacag
gaatatattcgtttagcgattaaaaaagtgggtgatcaatccctgaaaactctcaaagaa
aatctgggagataattatagttatgaggaaattaaattagttgttgcttggcaaagacga
ccccggcaataa
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