KEGG   Microcystis panniformis: VL20_6176
Entry
VL20_6176         CDS       T04037                                 
Name
(GenBank) ATP-dependent DNA helicase RecQ
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
mpk  Microcystis panniformis
Pathway
mpk03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mpk00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    VL20_6176
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mpk03019]
    VL20_6176
   03400 DNA repair and recombination proteins [BR:mpk03400]
    VL20_6176
Enzymes [BR:mpk01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     VL20_6176
Messenger RNA biogenesis [BR:mpk03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     VL20_6176
DNA repair and recombination proteins [BR:mpk03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      VL20_6176
SSDB
Motif
Pfam: RQC HTH_40 DEAD Helicase_C HRDC RecQ_Zn_bind ResIII HTH_11 HTH_28 HTH_5 HTH_20 TrmB MarR TnsD HTH_24 HTH_36 HTH_29 GH18_BT1044-like DUF5750
Other DBs
NCBI-ProteinID: AKV70939
UniProt: A0A0K1S9Z4
LinkDB
Position
5390741..5392852
AA seq 703 aa
MAAIDSLEKVLKYHFGYDQFRPNQRQIIEAALNNQDLLVIMPTGGGKSLCFQLPALIKKG
VTVVVSPLIALMQDQVTALADNGIGATFLNSTLNAKQVRERESLILQGKIKLLYVAPERL
LSPSFLDFLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQVRQRFPSAPILALTA
TATQQVREDIIQQLGLRDTSIHIASFNRPNLYYEVRSKTSKSYQQLYQYIKGQKGSGIVY
CISRKTVDKVAEQLQKDGIDALPYHAGMDDRERSENQTRFIRDDVQIMVATIAFGMGINK
PDVRFVVHYDLPRNLEGYYQESGRAGRDGEPAKCTLFFSFADARKIEYFINQKTEQNEQQ
KARQQLRQVLDYAEGTECRRSSVLGYFGESFSGNCGNCDNCRNGNNSEDWTIEAQKFLSC
VARTGQKFGMMHIINVLRGGKGERITQYQHHLLSTYGIGKDKTVGEWKRLSRSLVQQNLL
VETEDNFRILKLNQNSWEVMRKQRSVFIAVPQKANGQILGDDNPNTLESDLLFERLRQLR
KKIADSQGVPPYVIFHDSSLRLMAQSKPRSLGEFRQISGVVQSKVQQYGDIFIAAINDFC
QDSLPSTQFLTLQYYQDGLNAEEIARKRSLKVSTIYEHLAKLLEAGYEIDINQLVSKNKQ
EYIRLAIKKVGDQSLKTLKENLGDNYSYEEIKLVVAWQRRPRQ
NT seq 2112 nt   +upstreamnt  +downstreamnt
atggctgcaattgactctttagaaaaagtcttaaaatatcactttggctacgatcaattt
cgaccgaatcaacgccaaataattgaggctgctttaaataatcaggatttattagtaatt
atgcccactggaggcggtaaatctctctgttttcagctacctgctttaatcaaaaaaggg
gtgacggtggtggtttctcccctaattgctttaatgcaggatcaagtaactgctttagct
gataatggcatcggggcaacatttctcaatagcactttaaatgctaaacaagtcagagaa
agagaatctttaatcctgcaaggaaaaattaaactgttatatgtcgcgccagaaagatta
ttatcgcctagttttttagattttttagctgttattgataattaccttggtttagcctgt
ttagcggtagatgaagctcactgtgtctccgattggggtcatgattttcgccctgaatat
cgacaaattaaacaagttcgtcaacgctttccctctgcaccaattctggctttaactgcc
accgctacccaacaggttagggaagatattatccaacaattaggattgcgagatacttcc
attcatattgctagttttaatcgtcctaatctttattatgaagttcgatctaaaaccagt
aaatcttatcagcaattgtatcaatatattaaaggacaaaaaggatcaggaatagtttac
tgtatcagccggaaaaccgtcgataaagttgccgaacagttacaaaaagatggtattgat
gccctaccctatcacgccggtatggatgatcgggaaagaagcgaaaatcaaacccgtttt
attcgggatgatgtgcagattatggtggcaacaattgccttcggtatggggattaataaa
ccagatgtgcgctttgtcgttcattatgatttaccccgcaatttagagggatattatcaa
gaatcgggccgcgccggtagggacggagaaccggctaaatgtaccctcttttttagcttt
gcagatgccagaaaaattgagtattttattaaccaaaaaaccgagcaaaatgaacaacag
aaagctcgtcaacaattgcgacaggtgttagattatgccgaagggactgaatgcagaaga
tcgagtgtactaggctactttggcgaaagtttttcaggtaactgtggtaactgtgataac
tgtcggaatggtaacaattccgaggattggacaatcgaggcacaaaaatttttatcctgt
gtggcgcggacgggacaaaaattcggtatgatgcacataatcaacgtgctgaggggagga
aaaggtgaaagaatcacccaatatcaacatcatttattatctacttatggcatcggtaaa
gataaaactgtcggggagtggaaacgtttaagtcgttcccttgtccagcaaaatctactg
gtagaaactgaagacaattttagaatcttgaaacttaatcaaaacagttgggaagtgatg
cggaaacaacgttccgtgtttattgctgtcccccaaaaagctaacggtcaaatcttggga
gacgacaatcccaatacgctggaaagtgatttattattcgagcgcttgcgacaactgcgg
aaaaaaattgccgatagtcaaggggttcctccctacgttatttttcatgattctagtctg
cgtttgatggctcaatcaaaaccccggagtttaggggagtttcgtcaaatttctggagta
gtacaaagcaaagtgcagcagtatggtgatatatttatagcggcaattaatgatttttgt
caggatagtcttccctctactcaattcctcactctccaatactatcaagatggtttgaat
gcggaagaaatcgctcgcaaaagaagcttaaaagtctcaaccatctatgaacatttagct
aaattgctggaagcgggttacgaaattgatattaatcagttagtctctaaaaataaacag
gaatatattcgtttagcgattaaaaaagtgggtgatcaatccctgaaaactctcaaagaa
aatctgggagataattatagttatgaggaaattaaattagttgttgcttggcaaagacga
ccccggcaataa

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