KEGG   Methanosphaerula palustris: Mpal_2781Help
Entry
Mpal_2781         CDS       T00823                                 

Definition
(GenBank) DNA ligase I, ATP-dependent Dnl1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
mpl  Methanosphaerula palustris
Pathway
mpl03030  DNA replication
mpl03410  Base excision repair
mpl03420  Nucleotide excision repair
mpl03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mpl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Mpal_2781
   03410 Base excision repair
    Mpal_2781
   03420 Nucleotide excision repair
    Mpal_2781
   03430 Mismatch repair
    Mpal_2781
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mpl03032]
    Mpal_2781
   03400 DNA repair and recombination proteins [BR:mpl03400]
    Mpal_2781
Enzymes [BR:mpl01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Mpal_2781
    6.5.1.6  DNA ligase (ATP or NAD+)
     Mpal_2781
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     Mpal_2781
DNA replication proteins [BR:mpl03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    Mpal_2781
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     Mpal_2781
DNA repair and recombination proteins [BR:mpl03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     Mpal_2781
   NER (nucleotide excision repair)
    Other NER factors
     Mpal_2781
   MMR (mismatch exicision repair)
    Other MMR factors
     Mpal_2781
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Motif
Other DBs
NCBI-ProteinID: ACL18036
UniProt: B8GGB8
LinkDB All DBs
Position
complement(2907964..2909634)
Genome map
AA seq 556 aa AA seqDB search
MQFSIFAQTCAALEAQNGRLEMKHAISVILPSLSGEDLPIFIRFLMGKIFPDWSPQKLGI
GPNLLYEAVAYVAGTKKTALVDLINRTGDAGLAIEQFLATKEQTAFFTEDPSLAEVYAAC
TRIAASAGGRSQRERLLVLRQLFGNVSPFEARYLARLILGELRIGIGEGTVRDAIAEAYT
VEPAQVEHAMQALNDLGEVALRAREGEEGLIHLSIAPFRPVKMMLAQAGTTIPEMLAAHG
EVAVEFKYDGTRFQFHKEGKTCRIYSRKLEEVTDAVPEVGEALLGATDHDVILDGEVIAI
GADGRPLPFQTVLRRFRRKHGIAAAREAITLVPRVFDILYRDGETLIDLPFQSRRAILSA
TIGPEYLAPQQVLSSAEAVDLLYLEAMAEGHEGVMLKDLLSLYSPGVRGKHWVKIKPEVE
TLDLVVIGAEWGEGRRARTFGSFLLACLDQGVFRAVSKVATGISDEQLQELYTLFKDQVI
AESGNTVTFEPTVIFEVGYAEIQKSPSYESGYALRFPRFVQVRDDKAVEEIETLESLTTR
YLAQKTQANGQPEFTL
NT seq 1671 nt NT seq  +upstreamnt  +downstreamnt
gtgcagttctcgatctttgctcagacctgcgccgccctcgaagcacagaacggccgcctc
gaaatgaagcatgcgatcagcgtcattctcccgtccctctctggagaggacctaccgatc
ttcatccggttcctgatgggaaagatcttccctgactggtcgccgcagaagctcgggatc
ggtccgaacctgctctacgaggcggtggcctacgtggcagggacgaagaagacggccctg
gtcgacctgatcaacagaaccggagatgcagggcttgctatcgaacagttccttgccact
aaggagcagacggccttcttcaccgaggacccgagtctcgccgaggtctacgcggcctgc
acccggatcgctgcctctgcaggaggccggtcccagcgcgaacggttgctggtcctccga
caactcttcggtaacgtatcccccttcgaggcgcggtatctggccagactgatcctcggc
gagcttcggatcggtatcggggaggggacggtccgggatgccatcgctgaggcctacacg
gtcgaaccggcgcaggtcgagcatgcgatgcaggcgctcaatgacctcggcgaggtggcc
cttcgggccagagagggtgaggagggactgatccacctgagcatcgccccgttcaggccg
gtgaagatgatgctcgctcaggcagggacgacgatcccagagatgctggctgctcacggc
gaggtggccgtggagttcaagtacgacggaacccggttccagttccataaagaggggaag
acctgccggatctactcccggaaactcgaggaggtgaccgatgccgttcccgaagtcggc
gaggccctgctcggagccacagaccatgacgtgattctggacggcgaggtgatcgctatc
ggggctgacggccggccgctcccgttccagaccgtgctccggcgtttccggcgcaagcac
gggatcgcggccgcccgggaggcgatcaccctggttccaagggtcttcgacatcctgtac
cgcgatggcgagaccctgatcgacctgccattccagagccggcgtgcgatcctatcagca
acgatcggtccggagtacctcgccccgcagcaggtgctctccagtgccgaggcggtcgac
cttctctacctggaggctatggccgaggggcacgaaggggtgatgctcaaggatctcctt
tccctgtactccccaggagtccgggggaagcactgggtgaagatcaaacccgaggtggag
accctcgaccttgtcgtcatcggtgctgaatggggcgaaggacggcgcgccaggaccttc
ggttcgtttctacttgcctgtctggatcagggggtcttccgggcggtcagcaaggtggcc
actggcatatcagacgagcagctgcaggagctgtacacgctcttcaaagaccaggtgatt
gctgaatcagggaacaccgtcacctttgaaccaacggtgatcttcgaggtcggctacgcc
gagatccagaagtccccgtcgtacgagagtgggtacgccctcagattcccgcgttttgtc
caggtcagagacgacaaggcggtagaggagatcgagacccttgagagcctcaccactcgg
tacctggcgcagaagacccaggcgaacggacagcctgagttcacgttatag

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