Micromonas pusilla: MICPUCDRAFT_37065
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Entry
MICPUCDRAFT_37065 CDS
T02696
Symbol
CLP1, JGI:MicpuC2_37065
Name
(RefSeq) pre-mrna cleavage complex family protein
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
mpp
Micromonas pusilla
Pathway
mpp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mpp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
MICPUCDRAFT_37065 (CLP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpp03019
]
MICPUCDRAFT_37065 (CLP1)
Enzymes [BR:
mpp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
MICPUCDRAFT_37065 (CLP1)
Messenger RNA biogenesis [BR:
mpp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
MICPUCDRAFT_37065 (CLP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
MMR_HSR1
AAA
Motif
Other DBs
NCBI-GeneID:
9689844
NCBI-ProteinID:
XP_003064566
JGI:
37065
UniProt:
C1N970
LinkDB
All DBs
Position
Unknown
AA seq
415 aa
AA seq
DB search
MESQTHYLNNDEELRVEVKLGTVVTATLVDGAAEIFGAELPKKTPTTLPGGKHAIFSWRG
ATIEIAGETEMTYTANASAPMTAYLNVDGVLQRRREAARAAGTPGPRVALVGPTDVGKSS
VAKILCNYAQARWTPTFSDLDLGQGGITCPATIGAVPIDRPIDACEGLPLEMPLVYFHGD
VSPGNNPTLYKALDRMGEMLRARDETNAAAAASGVVVNTMGWIDKAGYGLLLHALEALAI
DVVLVVDHEKLHAELSRDLRGKKIKVWKLQKSGGVVERTPEFRRRSRDARVREYFYGPLG
DLSPHSQTLEFGKVSIFKIGAGPSAPRSALPIGQESSADPLRVSTVAPSMSLLNAVLGVS
HGKTQAELLSSNVAGFIFVTDVDVANGRFTYLTPCPGELPSRNLIAGTLKWIETR
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atggagtcgcagacgcactacctgaacaacgacgaggagctccgcgtcgaagtcaagctc
gggaccgtcgtcaccgcgacgctcgtcgacggcgccgcggagatcttcggcgcggagctt
ccgaagaagacgccgacgacgctcccgggcgggaagcacgcgatcttctcgtggagaggc
gccacgatcgagatcgcgggggagacggagatgacgtacaccgcgaacgcgtccgcgccg
atgaccgcgtacctcaacgtcgacggcgtcctgcagcgcaggcgcgaggcggcgagggcg
gcggggacgccggggccgcgcgtcgcgctcgtcggacccacggacgtgggcaagtcgtcc
gtcgcgaagatcttgtgcaactacgctcaggcgcgctggacgccgacgttctcggatctg
gacctcggtcagggcgggatcacgtgcccggcgacgatcggcgcggtgccgatcgaccgc
ccgatcgacgcgtgcgagggcctgccgctggagatgccgctcgtgtacttccacggcgac
gtctcgccggggaacaatccgacgctgtacaaggcgctcgaccgcatgggagagatgctg
cgcgcgcgcgacgagacgaacgcggcggccgccgcgagcggggtggtcgtgaacacgatg
gggtggatcgacaaggctgggtacgggctcctgttgcacgcgctcgaggcgctcgcgatc
gacgtcgtcctcgtcgtcgaccacgaaaagttacacgcggagctatcgagggatctgcga
gggaaaaagatcaaggtgtggaagctccagaagagcggcggcgtcgtggagcgcacgccg
gagttccgaaggcggtcccgcgacgcgcgcgtgcgagagtacttttacggccctctcggc
gacctctccccgcactcgcaaacgttggagttcggcaaggtgtccatcttcaagatcggc
gcgggcccgagcgcgccgcggagcgcgctgccgatcggccaggagagcagcgcggacccg
cttcgcgtgtccacggtggcgccgtcgatgagccttctgaacgcggtgttgggcgtgagc
cacgggaagacgcaggctgagctcctctcgagcaacgtggcggggttcatcttcgtcacc
gacgtggacgtggccaacgggcggttcacgtacctgacgccgtgcccgggggagctgccg
tcgaggaacttgatcgcggggacgctcaagtggatcgagacgcggtga
DBGET
integrated database retrieval system
