Methylovulum psychrotolerans: CEK71_05260
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Entry
CEK71_05260 CDS
T04929
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
mpsy
Methylovulum psychrotolerans
Pathway
mpsy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mpsy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CEK71_05260 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mpsy03021
]
CEK71_05260 (rpoB)
03400 DNA repair and recombination proteins [BR:
mpsy03400
]
CEK71_05260 (rpoB)
Enzymes [BR:
mpsy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CEK71_05260 (rpoB)
Transcription machinery [BR:
mpsy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CEK71_05260 (rpoB)
DNA repair and recombination proteins [BR:
mpsy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CEK71_05260 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
ASF45524
UniProt:
A0A1Z4BW53
LinkDB
All DBs
Position
complement(1174179..1178252)
Genome browser
AA seq
1357 aa
AA seq
DB search
MSYSFTEKKRIRNNFGKSTEVLEVPYLLATQINSYASFLQLGATPEKRADIGLHSAFSSV
FPIESHSGYAVLEYVKYRLGDPVFDVRECQQRGATFAAPLRVLVRLVIYDKDAPGNAKIV
KDIREQEVYMGELPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKLLFNA
RVIPYRGSWLDFEFDHKDCVYVRIDRRRKIPATILLRALGYENEEMIKIFFETNKFTLSA
QQCLFHIVPERMRGEIAAFDIKYNGQVLVEEGRRITAKHIREMNKVGMTEVEVPRDYLIG
KILGHNVIDHSTGELVANVNDEISDALIERCIEKGIVEINTLFVNDLDRGPYISNAMRLD
TTSNTLEALVEIYRMMRPGEPPTKESAENLFQNLFFTDDRYDLSTVGRMKFNRRLGREEI
IGTGTLTKEDIIDVLKELISIRNGNGNVDDIDHLGNRRVRSVGEMIENQFRVGLVRVERA
VKERLTLADSEGLMPQEIINAKPVSAAVKEFFGSSQLSQFMDQNNPLSQVTHKRRVSALG
PGGLARERAGFEVRDVHATHYGRVCPIETPEGPNIGLINSLSVYARTNDYGFLETPYRKV
VNGHVTDQVDYLSAIEEGEFVIAQASVAVDESGKLVDGLVSCRHKDEFTLAMSDTVQYMD
VSSKQIVSVAASIIPFLEHDDANRALMGSNMQRQAVPTLRAEKPLVGTGMERTVAKDSGV
TVVATRGGKIEAVDAARIVVRVNDTETETGSSGVDIYNLIKYTRSNQNTCINQKPLVKPG
DIVNKGDIIADGPSTDMGELALGQNMLVAFMPWNGYNFEDSILVSERVVKEDRFTTIHIE
EKTCVARDTKHSPEEITADIPNVSEEALAKLDESGIVYVGAEVKGGDILVGKVTPKGETQ
LTPEEKLLRAIFGEKAADVKDTSLRVPGSIEGTVIDVQVFTRDGVKKDKRALDIEQDQIK
SYRKDLDDQLKILEEDIFLRVAKLLIGKVALAGVGLRAGTEISQDYLDGLRRSDWLKIKM
QDEELNLQLETVATQIEQQRKDFDEKFEIKRKKITMGDDLPPGVLKMVKVYLAVKRRIQP
GDKMAGRHGNKGVISMIRPIEDMPYTADGNPVDIVLNPLGVPSRMNVGQVLETHLGWAAK
GLGIKIGKMLEAKAKINEIREYLDKIYNGSGRKEDLDSFTDKEILEMAANLVAGVPMASP
VFDGADEEDIRTMLRLADLPEHGQITLYDGLTGEPFEREVTVGYMYMLKLNHLVDDKMHA
RSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVTGRTRMY
KNIVDGDHKMEAGMPESFNVLIKEIRSLAVDIELQRE
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atgtcctattcttttaccgaaaaaaagcgtattcgaaataactttggcaaaagcactgaa
gtgctcgaagttccttatcttctggcaacgcagatcaactcttatgccagctttctgcaa
ttgggtgccactcctgagaaacgcgccgatataggcttgcattccgccttctccagcgtc
ttccccattgagagccactccggttatgcagtgctcgaatatgtcaaatacagactaggt
gatcctgtttttgatgtcagagaatgccaacagcgcggggcaacctttgcggcgccgtta
cgcgttttagtgcgtctggtcatttatgacaaagatgccccgggtaacgcaaaaattgtt
aaagatatccgcgagcaagaagtttatatgggcgaattgcccttaatgaccgaaaatgga
actttcgttatcaatggcacggagcgggtaattgtttcgcaattgcaccggtcgccaggg
gtcttttttgaccatgacaaaggtaagacgcattcatccggcaagttgctgtttaatgca
cgggtgatcccttaccgtggttcatggctggattttgagtttgaccataaagattgcgtc
tatgtacggatagaccggcgcagaaaaatcccggcgactattttgttgcgggcgttaggt
tatgaaaacgaagaaatgattaagattttcttcgaaaccaacaagtttactttaagtgcc
caacagtgcctgttccatatcgtaccggaacgtatgcgtggtgaaatcgccgctttcgac
attaagtataacggccaagtgctggttgaagaaggccgccgtattaccgccaagcatatc
cgcgaaatgaacaaggtcggcatgaccgaagtggaagtgccgcgcgattatctgatcggc
aaaattttgggccacaacgtcattgaccactcgactggcgagttggtcgctaacgttaat
gatgaaatttccgacgcactgatcgagcgttgtattgaaaaaggcattgtcgaaatcaat
accttgtttgtcaatgatttggacagagggccgtacatcagtaacgccatgcgtctggac
acaaccagcaacacgctggaagcgttggtggaaatttaccggatgatgcgccctggggag
ccaccgactaaagaatcggcggaaaacttgttccaaaacctgttctttaccgatgaccgt
tatgatttgtcgacggtaggccggatgaaatttaaccgccgcttaggccgcgaagagatt
atcggtacaggtacgctgacgaaagaagacattattgatgtcctgaaagagttgatcagt
atccgtaacggtaacggcaatgtcgacgatattgaccatttgggtaaccgtcgtgtccgt
tcggtcggggaaatgatcgaaaaccaattccgcgtcggtttggtgcgggttgaacgtgcc
gtgaaggaacgtctgaccttggccgattccgaaggtctgatgccgcaagaaatcattaat
gccaagccggtgtcggcggcggttaaagaattctttggttccagccagttgtcgcagttt
atggaccaaaacaaccccttatcgcaagtgacccataagcgccgtgtatcggctttaggt
cccggcggtttggcgcgtgagcgagccggttttgaggtgcgtgacgtacacgccacccat
tatggccgggtttgcccgattgaaacgcctgaaggcccgaatatcggtctgattaactcg
ctgtcggtgtatgcgcgtaccaatgactatggtttcttggaaaccccgtaccggaaagtg
gtcaatggccatgttaccgaccaagtcgactatttgtcggcgattgaagaaggcgagttt
gttattgcccaggccagtgtcgcggttgacgaaagcggtaagttggttgacggtctggta
tcttgccgtcataaagacgagtttaccttggcgatgtccgacaccgtacagtacatggac
gtgtcgtctaagcagattgtttcggtcgccgcttctattattccgttcttggaacacgat
gacgcgaaccgcgcgttaatgggttctaacatgcagcgccaagccgtaccgaccttgcgg
gcagaaaagcctttggtgggtacaggtatggagcggacggtcgccaaagactccggcgtg
acggtggtcgctacccgtggcggtaagattgaagcggtcgacgccgccagaatcgtagtt
cgggttaacgataccgaaaccgaaactggcagctcaggcgtggatatttataacctgatc
aaatatacccgttctaaccaaaacacctgtatcaaccaaaaaccgttggtgaagccgggt
gacattgttaacaagggcgatattattgccgatggcccgtccaccgatatgggtgagttg
gccttggggcaaaatatgttggtggcgttcatgccatggaacggctacaacttcgaagac
tccattttggtgtctgagcgggttgtgaaagaagaccgcttcactaccattcatattgaa
gaaaaaacttgcgttgcgcgtgacactaagcacagccccgaagaaatcaccgccgacatc
ccgaacgtcagtgaagaggcgttggcgaaattggacgaatccggcattgtttatgtcggt
gcggaagtcaaaggcggcgatattctggtcggtaaggtaactccgaaaggcgaaacccaa
ctgacaccggaagaaaagttgttacgcgccatttttggcgagaaagcggccgatgttaaa
gacacttctttgcgggtgcccggcagtatcgaaggtacggtcattgacgtgcaggtcttt
acccgtgatggggtcaagaaagacaagcgggcgttggatattgagcaagaccaaatcaaa
agctaccgtaaggatttggacgaccaactgaaaattcttgaagaagatattttcttgcgt
gtcgccaagctgttaatcggtaaggtcgctttggcgggtgtgggtttgcgggccggcacc
gaaattagccaagactatttggatggcttgagacgttcggattggctgaaaatcaaaatg
caggatgaagagctgaacctgcaattggagacggtcgccacgcaaatcgagcaacagcgc
aaagattttgacgagaagtttgaaatcaaacgcaagaagatcaccatgggcgacgatttg
ccgccaggtgtcctgaaaatggttaaggtctatttggccgtcaaacggcgtatccagccg
ggtgacaaaatggcgggccgtcatggtaacaaaggggttatctcgatgatccggcctata
gaagacatgccttataccgccgacggcaatccggtcgacattgttctgaacccgttgggc
gtaccgtcgcggatgaacgtagggcaggttctggaaacccatttaggctgggcggctaag
ggtctgggcatcaaaatcggcaaaatgctcgaagcgaaagccaagattaacgagatccgc
gagtatctggacaagatttacaacggcagtggccgcaaagaagatctggactcctttacg
gataaagaaattcttgaaatggcggcgaatctggtggccggtgtgccgatggccagcccg
gtttttgatggtgcggacgaagaagacatccgtaccatgctcagattggcggatttgccg
gaacacgggcaaatcaccttgtacgatggtttgacgggtgaaccgttcgaacgtgaagtc
acggtcggctatatgtatatgctgaaactgaaccatttggttgacgataaaatgcatgcc
cgttcgactggcccttatagcttggtcacacagcagcctttgggcggtaaagcccagttt
ggtggtcagcgctttggggaaatggaagtctgggcgttggaagcctacggtgcggcctat
accttacaggaaatgctcaccgtcaaatccgacgacgtgaccggacgtacccgcatgtac
aaaaacatcgtggatggggatcataaaatggaagcaggtatgccggaatcttttaacgtt
ttgattaaagaaattcgctcattggctgtggatatagaattgcaacgcgaataa
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