Meiothermus ruber DSM 1279: Mrub_1581
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Entry
Mrub_1581 CDS
T01193
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mrb
Meiothermus ruber DSM 1279
Pathway
mrb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mrb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Mrub_1581
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mrb03019
]
Mrub_1581
03016 Transfer RNA biogenesis [BR:
mrb03016
]
Mrub_1581
Enzymes [BR:
mrb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Mrub_1581
Messenger RNA biogenesis [BR:
mrb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Mrub_1581
Transfer RNA biogenesis [BR:
mrb03016
]
Prokaryotic type
tRNA degradation factors
Mrub_1581
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
Rrp44_S1
FeoC
Motif
Other DBs
NCBI-ProteinID:
ADD28343
UniProt:
D3PSB0
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All DBs
Position
1614416..1616857
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AA seq
813 aa
AA seq
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MLEQRIYEHLKQHPKKRFSLRELVRSLRLDKDEAKEALDLLVAEGKVVEPRRKLYQLPEG
PGKKGLEGRLQAHAAGFAFVIPTNPDLPDLYIPKGHLGGAWHGDLVRAEPRPPGRGRDGK
PWGVVVEVLERAHHQVVGRLYFKQGFAWLKPDDPRLPALKLKPEGLEGLESGARLVVRVT
FPSGRKPQEPYGEFAGYLGQGDSPEVETEAIIAKYELRSVFPPEALAEAEKVAHLDPKEV
ARREDFRALRVFTIDGADAKDFDDAIHLELLPNGNYRVGIHIADVSHYVKEFSPLDHEAY
ARATSVYLPGRVLPMLPEQLSNGICSLKPHQDRLVLSVLVELTPKGRVKDYRFAEGVIRS
VARLTYTEVEAFAEALEAPEKALAPAPSDWSLELQNDLKLLLGLTRTLKERRLEQGALDF
RFTEVKVEVDEEGNLHLIPQKEPRARSLIEELMLLANRVVAKHLAEREIPTLFRVHEDPS
EEAYNKLVAALGRLGYSLPGGEPSPKALQSILKQAEGRPEEAVVSTLLLRSLRLARYAAE
NLGHFGLAAEHYLHFTSPIRRYPDLVVHRVLRALLKRRVTQARKEDWAQRFPKIAEHASE
RERAAESAERELTKYYQCLWAQKHQGETFRGTVSGVTGFGVFVSLDNGVEGMIRLGALED
DHYEYIEELLALEGLRTKRRIRIGDEMEVKIEGANPSARQIDLVPTEKFYQTETQPEPEQ
PKRKKRRRGKRGKAAEAPSKAARKVVATEPKSPAPHARARSRRVVGPPEERGGFQKPVKV
RAQKIYFGSWGGDQEQAPPSKAEKSGKKKRRRR
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
atgctagaacaacggatttacgagcacctcaaacagcaccccaaaaagcgcttcagtctg
cgcgagctggtgcggagcctgcggctcgacaaggacgaggccaaggaagccctggacctg
ctggtagccgaggggaaggtggtcgagccgcggcgcaagctctaccaactccccgaggga
ccggggaaaaagggcctcgagggccgcctgcaagcccatgcagcgggttttgcttttgtg
attcccaccaaccccgacctgcccgacctctacattcccaagggccacctgggcggggcc
tggcacggcgacctggtacgggccgagccacgcccaccgggccgcggccgcgacggcaag
ccctggggtgtggtggtggaggtgctcgagcgggcccatcatcaggtggtggggcggctg
tacttcaagcaggggtttgcctggctcaaacccgacgacccaaggctgcccgcgctcaag
ctcaagccggagggcctcgagggcctggaaagcggggcgcggctggtggtgcgggtcacc
ttccccagcgggcgcaagccgcaggagccctatggggagttcgcgggctacttaggccag
ggggatagccccgaggtcgagaccgaggccatcatcgccaagtacgagctgagaagcgtc
ttcccgcccgaagccctggccgaagccgagaaagtggcccatctggaccccaaagaagtt
gcgcgccgcgaggacttccgggccttgcgggtttttaccattgacggggccgacgccaag
gacttcgacgacgccatccacctcgagctgctccccaacggcaactaccgcgtgggcatt
cacatcgccgacgtctcgcactacgtaaaggagttctcgcccctcgaccacgaagcctat
gcccgcgccaccagcgtctatctgccggggcgggtgctgcccatgctgcccgagcagctt
tccaacggcatctgttcgctcaagccccaccaagaccggctggtgctctcggtgctggtg
gagctgacccccaagggccgggtcaaggactaccgcttcgccgaaggggtgatccgcagc
gtggcccggctgacctacaccgaggtggaggctttcgcggaggcgctcgaggcccccgaa
aaggccctggcccccgccccctccgactggagcctcgagctccagaacgatctgaagctg
ctgcttgggcttacccgcaccctcaaggagcgccgcctggaacagggcgcgctggatttc
cgctttaccgaggtcaaggtggaggtggatgaggagggcaacctgcacctgatcccgcag
aaagagcccagggcccgcagcctgatcgaagagctgatgctgctggccaaccgggtggtc
gccaaacacctggccgaacgagagatccccaccctcttccgcgtgcacgaagaccccagc
gaggaggcctacaacaagctggtggcggccctgggccggctgggttatagcctgccgggc
ggtgaaccaagccccaaagccctgcaaagcatcctgaagcaggccgagggccgccccgag
gaggccgtggtctcgaccctgctgttgcgctccttgcgcctggcccgctacgctgccgaa
aacctggggcacttcggcctggccgccgagcactacctgcacttcaccagccccatccgg
cgctaccccgacctggtggtgcaccgggttctgcgcgcgctgctcaagcgtcgggtgacc
caggcccgcaaggaagactgggcccagcgcttccccaaaattgccgagcacgcctcggag
cgggagcgggccgccgagagtgccgagcgcgagctgaccaagtactaccagtgcctgtgg
gcacaaaagcaccagggcgaaaccttccggggcacggtctcgggcgtaaccgggtttggg
gtgttcgtgagcctggacaacggggtggagggcatgatccggctgggggccctcgaggac
gaccactacgagtacattgaagagctgctggccttggagggcctgcgcaccaagcgccgc
attcgcataggagacgagatggaagtaaagatagaaggagccaacccttcggcgcggcag
attgatctggtgccgaccgaaaagttttaccagaccgaaacccaacccgaacccgagcag
ccaaagagaaaaaagcgccgtaggggtaagcgtgggaaagccgccgaagcccccagcaaa
gcggcgcgcaaggtggtggctaccgaacccaaaagcccggccccacacgcccgggcccgc
tcgaggcgggtggtgggcccccccgaggaacgcgggggcttccagaagccggtcaaggtc
agggcccagaaaatctactttggctcgtgggggggcgaccaggagcaggccccacctagc
aaagcagagaagtccggtaagaaaaagcgccgccgccgctag
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