Mycolicibacterium rhodesiae: MycrhN_3288
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Entry
MycrhN_3288 CDS
T01685
Name
(GenBank) DNA ligase D/DNA polymerase LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mrh
Mycolicibacterium rhodesiae
Pathway
mrh03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mrh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MycrhN_3288
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mrh03400
]
MycrhN_3288
Enzymes [BR:
mrh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MycrhN_3288
DNA repair and recombination proteins [BR:
mrh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MycrhN_3288
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AEV73813
UniProt:
G8RNW2
LinkDB
All DBs
Position
3288010..3290331
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AA seq
773 aa
AA seq
DB search
MVVDQFGRVKLTNPDKVLYPATELRPKAVTKQEVFDYYVRIAEVMVPHIAGRAVTRKRWP
NGVDEPSFFEKQLASSAPDWLERGSIAHKSGTTTYPIINSAEGLAWIAQQASLEVHVPQW
RFVSTWTRDEGAEQTPGPATRVVFDLDPGEGVTFRQLCEVAHEVRELIAGMGLTTFPLTS
GSKGLHLYVPLDEPISSRGASVLAKRVAQQLEQAMPKRVTATMTKSLRAGKVFLDWSQNN
GNKTTIAPYSLRGRDEPTVAAPRTWDEIEDPELRHLRFDEVLERVERDGDLLAQMDTDAP
VADALTTYRSMRDAGKTPEPVPHVAPTPGNDDFFVIQEHHARRLHYDFRLERNGVLVSWA
VPKNLPDTPSVNHLAVHTEDHPFEYGSFEGEIPKGEYGGGKVVIWDTGTYETEKFRDHAP
DGPAKGGEVIITLHGKKIDGRYALIQTDGKNWLAHRMKEQANPQASDLAPMLSTEGSIAK
LTSAQWAFEGKWDGYRVLVDANHGKLNVRSRRGRDVTGEYPQFASLAADLADHHVILDGE
AVALDKHGVPSFSEMQNRARSTRVEFWAFDILYLDGRSLLKAKYSDRRRLLEALADGGNL
IVPDPLPGDGPEALEHAREHRWEGVVAKKLDATYQPGRRSKSWIKDKIWNTQEVVIGGWR
KGDGGRSSGIGALMLGIPSPDNPEGGLQFVGRVGTGFTEKELSKLKGILEPLATEESPFN
ARLSTIDARGVTFVRPELVGEVRYSERTSDDRLRQPSWRGLRPDKEPSEIVWE
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
gtggtggtggatcagttcggtcgggtgaaactgaccaacccggataaggtgctgtaccca
gcgacggaattgcggccgaaggccgtcacgaaacaagaagtcttcgactactacgtccgc
atcgccgaggtgatggtgccccacatcgcgggccgagcggtcacccgtaaacgctggccc
aacggtgttgacgagccatcgttcttcgagaagcagttggcctcgtcggcacccgactgg
ctcgagcggggctcgatcgcgcacaagtcggggaccaccacatatccgatcatcaatagc
gccgagggactggcgtggattgcgcagcaggcgtcattggaagtgcacgtgccgcagtgg
cgattcgtcagcacatggaccagagacgaaggagccgaacagacgccggggccggccaca
cgggtggtgttcgacctggatcccggtgaaggcgtgacattccggcagctgtgcgaggtc
gctcacgaggtacgtgaactgatcgccggcatgggactgactaccttcccactgaccagc
gggagcaaggggctgcacctgtatgtgccactggacgagccgatcagttcgcgaggcgcg
tcggtgctcgcgaaacgggtggcgcagcagctggagcaggcgatgcccaaacgggtcacc
gcgacgatgacgaaaagccttcgcgcaggcaaggtgttcctggactggagccagaacaac
gggaacaagaccacgatcgcgccgtattcgctgcggggccgggacgagccgaccgtcgcc
gcgccccgcacctgggatgagatcgaggatcccgagctgcggcaccttcgcttcgacgag
gtgctggaacgcgttgaacgcgacggtgacctgctggctcagatggacaccgacgccccc
gtggctgacgcgctcaccacctaccgcagcatgcgcgacgccggtaagacacctgagccg
gtaccgcacgtcgcgcccacgccgggcaacgacgacttcttcgtcatccaggagcatcac
gcgcgtcggctgcactacgacttccggctggagcgcaacggcgtgctggtgtcatgggcg
gtcccgaagaacctgcccgatacaccgtcggtcaaccacctggccgtgcacaccgaggat
catccgttcgagtacggaagcttcgagggtgaaatcccgaagggcgagtacggcggcggc
aaggtggtcatctgggacaccggcacttacgagaccgagaaatttcgtgaccacgctcca
gacggtccggccaagggcggcgaagtcataatcacgttgcacggcaagaagatcgacggc
cgatacgcgctcattcagaccgacggcaagaattggctggcgcatcgtatgaaggaacag
gccaacccacaggccagcgatctggcaccgatgctctcgacggagggctcgatcgcgaag
ctgacctcggcgcagtgggcgttcgagggcaaatgggacggctaccgagtcctggtcgac
gccaatcacggcaaactcaatgtgcggtcacgccgcggccgcgatgtcaccggcgagtat
cctcagttcgcctcgctcgctgccgatctcgccgatcaccacgtcatcctcgacggcgag
gcggtggccctcgacaaacacggcgtgccgagcttctcggaaatgcagaaccgcgcgcgg
tcgacccgcgtggaattctgggcgttcgacatcctgtacctcgacgggcgctcactgctg
aaggccaagtactccgatcggcgtcgcctgctcgaggcgctggccgacggcggcaacctg
atcgtgccggatccgttgcccggcgacggccccgaagcgttggaacacgcgcgggaacat
cgctgggagggtgtggtcgcgaagaagctggatgcgacctaccagccggggcggcgatcc
aagtcgtggatcaaggacaaaatctggaacacccaggaagtggtgatcggcggctggcgc
aagggtgacggcggccggtccagcggtatcggggcgctgatgctcggtatccccagtcca
gacaatcctgagggcggcctgcagttcgtcggtcgggtgggcacggggttcacggagaag
gagctgtccaaactcaaaggcatcctcgagccgctggcgaccgaggaatcaccgttcaac
gcccgcctctccacaatcgacgccagaggcgtcaccttcgtccgcccggaattggtcggc
gaagtgcggtacagcgaacggacatccgacgatcggctgcggcaaccgagctggcgcggc
ctgcgcccggacaaggagccgtccgagatcgtgtgggagtag
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