Micromonospora sagamiensis: GCM10017556_46170
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Entry
GCM10017556_46170 CDS
T06946
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
msag
Micromonospora sagamiensis
Pathway
msag03030
DNA replication
msag03430
Mismatch repair
msag03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
msag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GCM10017556_46170 (dnaE)
03430 Mismatch repair
GCM10017556_46170 (dnaE)
03440 Homologous recombination
GCM10017556_46170 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
msag03032
]
GCM10017556_46170 (dnaE)
03400 DNA repair and recombination proteins [BR:
msag03400
]
GCM10017556_46170 (dnaE)
Enzymes [BR:
msag01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
GCM10017556_46170 (dnaE)
DNA replication proteins [BR:
msag03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
GCM10017556_46170 (dnaE)
DNA repair and recombination proteins [BR:
msag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
GCM10017556_46170 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
BCL16878
LinkDB
All DBs
Position
5241265..5244795
Genome browser
AA seq
1176 aa
AA seq
DB search
MADSFAHLHVHTEYSMLDGAARLKDLFAEASRLGMPAVAMTDHGNMHGAHDFYKQAMAAG
ITPVLGIEAYVAPESRFHKQRVKWGRPEQKSDDVSGSGGYTHKTIWARNRTGLHNLFTLT
SKAYTEGFFVKWPRMDTELIAAHAEGLMATTGCPSGEVQIRLRLGQDAQALEAAAKYQEI
FGRENYFLELMDHGLDIEKRVRDGLLEIGKKLAIPPVVTNDSHYTHEAQAESHDVLLCVQ
TGSNIADPNRFKFGGSGYFIKSAEEMRAVDGSDVWLEGCRNTLLVAERVDPAGMFEFHNL
MPRFPVPEGETEESWFRKETFKGLARRFPNGVPEGHVVQAEYELGVIIQMGFPSYFLVVA
DFIQWAKNQGIAVGPGRGSAAGSLVAYALGITDLDPIPHGLIFERFLNPERVSMPDVDID
FDERRRGEVIKYVTDKWGEDKVAQIATFGTIKAKAAIKDSARVLGYPYAVGDRITKAMPP
AVMGKDIPLGGIFDPKHPRYAEAGEIRGLYESDPDVRKVIDTAKGIEGLIRQTGVHAAGV
IMSAEPIIEHIPLMRRDSDGVIITQFDYPTCESLGLLKMDFLGLRNLTIIDDAVKNIQLN
HGKDLDLLGLELDDKAAYELLARGDTLGVFQLDGGPMRSLLRLMKPDNFEDISAVLALYR
PGPMGVDSHTNYALRKNGLQEITPIHPELEEPLREILAPTHGLIVYQEQVQRAAQILAGY
TLGQADLLRRAMGKKKKEILDKEFIPFRDGCRERGYSDEAIQAVWDVLVPFAGYAFNKAH
SAAYGLVSYWTAYLKAHYPAEYMAALLTSVGDDKDKMALYLSECRRMRIQVLPPDVNTSA
GPFTPVGKDIRFGLAAVRNVGANVVAAIMRCREEKGEYADFYDFLSKVDAVVCNKKTIES
LIKAGAFDALGHPRKGLLAVHAEAIDAYADVKRKEAVGQYDLFGAGFGDADTTSTTVMPV
IGDGEWDKRDKLAFEREMLGLYVSDHPLFGLEHVLGAAADCTIAALSEEGSVPDGAVVTL
AGILSGVQRRVTKQGRAWASATLEDLAGGVETLFFPNTYEVIGQYIAEDAIVVVKGRVDR
RDDTPRIMAMDMQLPDVTSNPGSKPVTLTIPVHRCTPPLVERLKETLVLHPGDTEVHVKL
LNGGKVTTLRLGPFRVAATTALMGDLKSVLGPANVS
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atggccgactcgttcgcgcatctgcacgtgcacacggagtactcgatgctcgacggtgcg
gcccgtctcaaggacctcttcgccgaggcgagccgactgggcatgccggcggtggcgatg
accgaccacggcaacatgcacggcgcgcacgacttctacaagcaggccatggccgccggg
atcaccccggtgctcggcatcgaggcgtacgtggcgccggagtcgcgcttccacaagcag
cgggtgaagtggggtcgtccggagcagaagagcgacgacgtctcgggtagtggtggctac
acccacaagacgatctgggcgcgcaaccggaccgggctgcacaacctcttcacgctcacc
tcgaaggcgtacaccgagggattcttcgtcaagtggccccggatggacaccgagctgatc
gccgcgcacgccgagggcctgatggccaccaccggctgcccgtcgggtgaggtgcagatc
cggctgcgtctcggccaggacgcccaggcactggaggcggcggcgaagtaccaggagatc
ttcggccgggagaactacttcctggagctgatggaccacggcctggacatcgagaagcgg
gtccgggacgggctgctggagatcggcaagaagctggccatccccccggtggtcaccaac
gactcgcactacacccacgaggcgcaggccgagtcgcacgacgtgctgctctgcgtccag
accggcagcaacatcgccgacccgaaccggttcaagttcggcggcagcggctacttcatc
aagtccgccgaggagatgcgcgcggtcgacggctcggacgtgtggctggagggctgccgt
aacaccctgctggtcgccgaacgggtcgacccggcggggatgttcgagttccacaacctg
atgccgcggttcccggtgccggagggggagaccgaggagtcctggttccgcaaggagacc
ttcaagggactggcgcgccgcttcccgaacggtgtcccggaggggcacgtcgtccaggcc
gagtacgagttgggcgtcatcatccagatgggcttcccgtcgtacttcctcgtggtcgcc
gacttcatccagtgggcgaagaaccagggcatcgcggtcggtccgggccgtggctcggcg
gccggctcgctggtcgcgtacgcgctcggcatcaccgacctggacccgatcccgcacggc
ctgatcttcgagcggttcctgaaccccgagcgggtctccatgccggacgtcgacatcgac
ttcgacgagcgtcggcgcggtgaggtgatcaagtacgtcaccgacaagtggggtgaggac
aaggtcgcccagatcgccaccttcggcacgatcaaggcgaaggccgcgatcaaggactcg
gcccgggtgctcgggtacccgtacgcggtgggtgaccggatcaccaaggcgatgcccccg
gcggtgatgggcaaggacatcccgctcggcggcatcttcgacccgaagcacccccggtac
gccgaggccggcgagatccggggcctgtacgagtccgacccggacgtccgcaaggtgatc
gacaccgccaagggcatcgaggggctgatccggcagaccggtgtgcacgcggccggcgtg
atcatgtcggccgagccgatcatcgagcacatcccgctgatgcgccgggactccgacggg
gtgatcatcacccagttcgactacccgacgtgcgagtcgctcgggctgttgaagatggac
ttcctcggcctgcgcaacctgacgatcatcgacgacgcggtcaagaacatccagctcaac
cacggcaaggacctcgacctgctgggcctggagctggacgacaaggccgcctacgagctg
ctggcccggggcgacacgcttggcgtgttccagctcgacggcgggccgatgcggtcgctg
ctgcggctgatgaagccggacaacttcgaggacatctccgccgtcctcgcgctctaccgg
cccggcccgatgggcgtggactcgcacaccaactacgcgctgcgcaagaacggcctccag
gagatcaccccgatccacccggagctggaggaaccgctccgggagatcctggcccccacc
cacggcctgatcgtctaccaggagcaggtgcagcgcgccgcgcagatcctcgccggctac
acgctcggccaggccgacctgctccggcgggcgatgggcaagaagaagaaggagatcctc
gacaaggagttcatcccgttccgggacggctgccgcgagcgcggctactccgacgaggcg
atccaggcggtgtgggacgtgctggtcccgttcgccggctacgccttcaacaaggcgcac
tccgcggcgtacgggctggtgtcgtactggacggcgtacctcaaggcgcactacccggcc
gagtacatggccgcgttgctgacctcggtcggcgacgacaaggacaagatggcgctctat
ctctccgagtgccgccggatgcggatccaggtcctgccgccggacgtgaacacctccgcc
gggccgttcaccccggtcgggaaggacatccggttcgggctcgcggcggtccgcaacgtc
ggcgcgaacgtggtcgccgcgatcatgcgttgccgggaggagaagggcgagtacgccgac
ttctacgacttcctgtcgaaggtcgacgcggtggtctgcaacaagaagaccatcgaatcc
ctgatcaaggccggggcgttcgacgcgctggggcacccccgcaagggcctgctcgccgtg
cacgccgaggcgatcgacgcgtacgccgacgtcaagcgcaaggaggcggtcggccagtac
gacctcttcggtgccggcttcggtgacgccgacaccaccagcacgaccgtgatgccggtg
atcggcgacggcgagtgggacaagcgggacaagctcgccttcgagcgcgagatgctcggc
ctctacgtctccgaccacccgctgttcgggctggaacacgtcctcggcgcggcggcggac
tgcaccatcgccgcactgtcggaggagggctcggtgcccgacggtgcggtggtcaccctc
gccggcatcctctccggggtgcagcgccgggtgaccaagcagggccgcgcctgggcgtcg
gccaccctggaggacctggccggcggggtggagacgctgttcttcccgaacacctacgag
gtgatcgggcagtacatcgccgaggacgcgatcgtggtggtcaagggccgggtggaccgc
cgggacgacacccccaggatcatggcgatggacatgcaactgcccgacgtcaccagcaat
ccgggcagcaagccggtcaccctgaccattccggtgcaccggtgcacgccgccgctggtg
gaacggctcaaggagaccctggtgctgcatcccggcgacaccgaggtgcacgtcaagctc
ctcaacggcggcaaggtcaccacgctgcggctcgggccgttccgggtggccgcgaccacc
gcgctgatgggtgacctgaagagcgtgctcggcccggcgaacgtgagctga
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