KEGG   Mycobacteroides saopaulense: MYCSP_04450Help
Entry
MYCSP_04450       CDS       T05445                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
msao  Mycobacteroides saopaulense
Pathway
msao03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:msao00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    MYCSP_04450
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:msao03400]
    MYCSP_04450
Enzymes [BR:msao01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     MYCSP_04450
DNA repair and recombination proteins [BR:msao03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     MYCSP_04450
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: ALR10839
LinkDB All DBs
Position
902520..904862
Genome map
AA seq 780 aa AA seqDB search
MERISPVWPTGAAESATSGSGSTAFVRLTNAEKVLYPATGTAGPTTKADVFGYYTAIAPY
MLPHIAGRPVTRKRWPNGVDQPSFFEKDLAASAPDWLARRRIEHKSRYVTYPLIDTSVAL
AWIAQQAALEVHVPQWRFVGENPGPATRLVFDLDPGEGVSMPQLAQVARAVRDVLTDIGL
TTFPLTSGSKGLHLYVPLAQPVSSSGAVTVAKKIATQLEQAMPELVTATMTRQLREGKVF
VDWSQNSGSKTTVAPYSLRGRRVPTVAAPRTWEELDDPELRQLRFDEVLARVERDGDLLS
GLDDVTIVEDRLSTYRSMRDPARTPEPVPAVKPEAGQNNSFVIQEHHATALHYDFRLERD
GVLVSWAVPKNLPMEPSVNHLAVHTEDHPLEYGTFEGAIPKGEYGAGEVTIWDSGTYDTE
KFIDPRDDSGESKGEVIVTLHGKRITGRYALIRTNGKQWLAHRMKDQRSPGSMPTGLTPM
LPSTGSVAGLTADEWAFEGKWDGYRLILECDRGQLRALARSGRDVTGEFPALQRLAHELA
DHRVILDGEVVALDTKGLPSFSLLQNRTAGTETEFWAFDLLYLDGKSLLRNKYRDRRRLL
DVLGAGTESMTVPEPLDGDGASALAHSHEHGWEGVIAKRLDSLYVPGRTQSWIKAKNWSS
QEVVIGGWRQGKGGRSSGIGALLMGIPVEGGLRYAGRVGTGFTEKELATLKERLEPLHRK
ESPFSAPLSAIEAKDVQFVEPVLVAEVRYGDRTPAGILKHSSWRGLRTDKSVGDVELDLG
NT seq 2343 nt NT seq  +upstreamnt  +downstreamnt
atggaacgcatatccccagtatggcccactggagccgcggagtcggcgacatccggctct
gggtcaaccgcgttcgtgcgcttgaccaatgcggaaaaggtgctgtacccggctaccggg
accgctggacccaccaccaaggcggatgttttcggctactacaccgcgatcgccccctac
atgctgccgcacatcgccgggcgaccggtaacgcgcaagcgttggcccaatggcgttgac
cagccatccttcttcgagaaggacctggccgcgtccgctcccgactggcttgcgcggcgg
cgcatcgagcacaagtcccgttacgtcacctatccgctgatagacacctcggtggcgttg
gcctggatagctcagcaggcggcattggaagtgcatgtgccgcagtggcggttcgtcggg
gaaaatcctggcccggcaacgcgattggtctttgacctggatcccggcgagggggtgagc
atgccgcagctggcacaggttgccagggcggtgcgcgatgtgctgaccgatatcggtttg
acgacgtttccgttgaccagtgggagcaaggggctgcacctgtatgtcccgctggcgcaa
ccggtcagctcatcgggtgcggtgaccgtcgcgaagaagatcgcgactcagctggaacag
gcgatgccggaattggtgaccgccacgatgactcggcagctacgtgaggggaaggtgttc
gtggactggagccagaacagcggctccaagaccaccgtcgccccctattccttgcgcggt
cgccgggtgccgacggttgccgcaccgcgtacctgggaggagttggatgatcccgagtta
cgtcagctgcgctttgacgaggtgctggcgcgcgtcgagcgcgacggcgacctgctgtcc
gggctcgacgatgtgacgatcgtcgaggacaggttgtccacgtatcgcagcatgcgcgat
cccgcgcgtacgccagaacccgttcccgccgtcaaaccggaagcagggcagaataattcg
tttgtcatccaggagcaccacgccaccgcgctgcactacgacttccggctggagcgcgat
ggtgtgctggtctcctgggccgttcccaagaatctgccgatggaaccgtcggtgaatcac
cttgcggtacacaccgaagatcaccccttggaatacggcaccttcgagggcgccattccc
aagggggagtacggcgcgggagaggtgaccatctgggactccggtacctacgacaccgag
aagttcatcgatccgcgcgatgactccggtgagtcgaagggggaggtcatcgtcaccctg
cacggcaagcgaatcacgggtcgatatgccctgattcgaaccaacggcaagcagtggctg
gcacaccggatgaaggaccagcggtcgcctggctcgatgcccaccggcctgacgccgatg
ctgccctccaccggatcggtggcgggtctgaccgccgacgagtgggcttttgaaggcaaa
tgggacggctaccgactcatcctcgaatgcgatcgcggtcagctgcgggcgctggcgcgc
agcggccgcgacgtcaccggcgagttccctgccctgcagcggctcgcgcacgaactggcc
gatcaccgcgtgattctggacggagaggtggtggcgttggatacgaaggggttgccgagc
ttctctctcttgcagaaccgtacggccggtaccgagacggagttttgggcgttcgatctg
ctgtatctcgatggaaaatccttattgcgcaacaagtaccgtgaccgccgccggctactg
gacgtgctgggcgcgggtaccgagtcgatgaccgttccggaaccgctggacggcgacggg
gcctcggcgctggcgcattcgcatgagcacggctgggagggggtcatcgcgaagaggctg
gattccctctacgttccgggtcgcacccagtcgtggatcaaggcgaagaactggagcagc
caagaggtcgtcatcggcggctggcgccaggggaagggcgggcgcagcagcgggatcgga
gccctgctcatggggataccggtcgagggcggactgcgttatgccggccgggtgggcacc
ggattcaccgagaaggaactggcaacgctcaaggagcggctggaaccgttgcaccgcaag
gaatcgccgttcagcgcaccgttatccgcgatcgaggccaaggatgtgcagttcgtcgag
ccggtgctggtggccgaggtgcgctacggggatcgcacgccggctggcatcctgaagcac
tccagttggcgcggcctgcgtaccgacaagtcagtgggcgacgtcgagctcgatctcggg
tag

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