Mycolicibacterium smegmatis MC2 155: LJ00_13220
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Entry
LJ00_13220 CDS
T03433
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
msb
Mycolicibacterium smegmatis MC2 155
Pathway
msb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LJ00_13220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msb03019
]
LJ00_13220
03016 Transfer RNA biogenesis [BR:
msb03016
]
LJ00_13220
Enzymes [BR:
msb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
LJ00_13220
Messenger RNA biogenesis [BR:
msb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LJ00_13220
Transfer RNA biogenesis [BR:
msb03016
]
Prokaryotic type
tRNA degradation factors
LJ00_13220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
KH_1
RNase_PH_C
KH_2
KH_5
KhpA-B_KH
DUF1490
DUF1773
Motif
Other DBs
NCBI-ProteinID:
AIU07831
LinkDB
All DBs
Position
2736033..2738324
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AA seq
763 aa
AA seq
DB search
MSVVELEDGVYESTAVIDNGSFGTRTIRFETGRLAQQAAGSAVAYLDDETMLLSATTASK
NPKDHFDFFPLTVDVEERMYAAGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLR
NEIQVVVTVMSLDPKDLYDVLAINAASMSTQLAGLPFSGPVGGARIALIDGTWVAFPTVE
QLERAVFDMVVAGRIVGDGDSADVAIMMVEAEATENVVELVAGGAQAPTEAVVAEGLEAA
KPFIKALCAAQQELADRAAKPAGEYPVFPDYEADVYDAVASVATEALAEALTIAGKTERN
DRTDEIKVEVLERLAEPYAGREKEIGAAFRSLTKKLVRQRILTDHFRIDGRGITDIRALS
AEVAVIPRAHGSALFERGETQILGVTTLDMIKMAQQIDSLGPENTKRYMHHYNFPPYSTG
ETGRVGSPKRREIGHGALAERALVPVLPSIEEFPYAIRQVSEALGSNGSTSMGSVCASTL
ALLNAGVPLKAPVAGIAMGLVSDDVDVDGKVEKRYVALTDILGAEDAFGDMDFKVAGTKD
FVTALQLDTKLDGIPSQVLAGALSQAKDARLTILDVMAEAIDRPDEMSPYAPRITTIKVP
VDKIGEVIGPKGKMINSITEETGAQISIEDDGTVFVGAADGLSAQAAIDKINAIANPQLP
KVGERFLGTVVKTTDFGAFVSLLPGRDGLVHISKLGKGKRIAKVEDVVKVGDKLRVEIAD
IDNRGKISLVLVAEESAESAESAGDKGAEKAEGAAADVTPAEA
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtagtcgaacttgaagacggtgtgtacgaatcgaccgctgtcatcgacaacggg
agcttcggcacccgcaccatccgtttcgagaccgggcgcctcgcccagcaggccgccggc
tccgccgtcgcctacctcgatgacgagaccatgctgctgagcgcgacgaccgccagcaag
aaccccaaggaccacttcgacttcttcccgctcacggtggacgtcgaggagcgcatgtac
gccgcgggtcgcatccccggttcgttcttccgtcgtgagggccgtccctccaccgacgcg
atcctgacctgccgtctgatcgaccgtccgctgcgcccgtcgttcgtcgacggtctgcgc
aacgagatccaggtcgtcgtgaccgtgatgagcctggatcccaaggatctgtacgacgtg
ctcgcgatcaacgccgcctcgatgtcgacgcagctcgccggtctgcccttctcgggcccc
gtcggcggcgcccgcatcgccctgatcgacggcacctgggtcgccttcccgaccgtcgag
cagctcgagcgcgccgtgttcgacatggtggtcgccgggcggattgtcggagacggcgac
agtgccgatgtggcgatcatgatggtcgaggccgaggccaccgagaacgtcgtcgagctc
gtcgcgggcggcgcgcaggcccccaccgaggccgtcgtggccgagggcctcgaggccgcc
aagccgttcatcaaggcgctgtgcgccgcgcagcaggaactggccgatcgcgccgccaag
ccggccggcgagtacccggtgttccccgactacgaggccgacgtgtacgacgcggtggcc
tcggtggccaccgaggcgctggcggaggccctgaccatcgcgggcaagaccgagcgcaac
gaccgcaccgacgagatcaaggtcgaggtgctcgagcgcctcgccgagccgtacgccggg
cgtgagaaggagatcggcgcggcgttccgttcgctgaccaaaaagcttgtgcgccagcgc
atcctgaccgaccacttccgcatcgacggccgtggcatcaccgacatccgtgcgctttcc
gccgaggttgcggtgatcccgcgggcgcacggcagcgcgctgttcgagcgcggcgagacc
cagatcctgggtgtcaccacgctggacatgatcaagatggcccagcagatcgactcgctg
gggccggagaacaccaagcgttacatgcaccactacaacttcccgccgtactcgaccggt
gagaccggccgcgtgggctcgccgaagcgtcgcgagatcggccacggcgcgctggccgag
cgggcgctggtgccggtgctgccgagcatcgaagagttcccgtacgccatccgccaggtg
tccgaggcgctgggctccaacggctcgacctcgatgggttcggtgtgcgcctcgacgctc
gccctgctcaacgcgggtgtgccgctgaaggctccggtcgccggcatcgccatgggtctg
gtgtccgacgacgtcgacgttgacggcaaggtcgagaagcgttacgtcgccctcaccgac
atcctcggtgccgaggacgccttcggtgacatggacttcaaggtcgccgggaccaaggac
ttcgtgaccgcgctgcagctcgacaccaagctcgacggcatcccctcgcaggtgctcgcc
ggtgcgttgagccaggccaaggatgcgcgcctgaccatcctggacgtgatggccgaggcc
atcgatcgtccggacgagatgagcccgtatgcaccgcggatcaccaccatcaaggtgccc
gtggacaagatcggcgaggtcatcggccccaagggcaagatgatcaactcgatcaccgag
gagaccggcgcccagatctcgatcgaggacgacggcacggtattcgtcggtgccgccgac
gggttgtcggcgcaggccgcgatcgacaagatcaacgcgatcgccaacccgcagctgccc
aaggtcggcgagcggttcctcggcacggtcgtcaagaccaccgatttcggtgcgttcgtg
tcgctgcttccgggccgtgacgggctggtgcacatcagcaagctcggcaagggcaagcgc
atcgccaaggtcgaagacgtggtgaaggtcggtgacaagctccgcgtggagatcgccgac
atcgacaaccgcggcaagatctcgctggtgctggttgccgaggagtcggcggaatccgcc
gagtcggccggtgacaagggtgccgagaaggccgagggcgctgccgccgatgtcacgccg
gccgaggcctga
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