KEGG   Metallosphaera sedula: Msed_0150Help
Entry
Msed_0150         CDS       T00509                                 

Definition
(GenBank) DNA ligase I, ATP-dependent Dnl1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
mse  Metallosphaera sedula
Pathway
mse03030  DNA replication
mse03410  Base excision repair
mse03420  Nucleotide excision repair
mse03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mse00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Msed_0150
   03410 Base excision repair
    Msed_0150
   03420 Nucleotide excision repair
    Msed_0150
   03430 Mismatch repair
    Msed_0150
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mse03032]
    Msed_0150
   03400 DNA repair and recombination proteins [BR:mse03400]
    Msed_0150
Enzymes [BR:mse01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Msed_0150
    6.5.1.6  DNA ligase (ATP or NAD+)
     Msed_0150
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     Msed_0150
DNA replication proteins [BR:mse03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    Msed_0150
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     Msed_0150
DNA repair and recombination proteins [BR:mse03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     Msed_0150
   NER (nucleotide excision repair)
    Other NER factors
     Msed_0150
   MMR (mismatch excision repair)
    Other MMR factors
     Msed_0150
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase PHA_synth_III_E
Motif
Other DBs
NCBI-ProteinID: ABP94327
UniProt: A4YD25
LinkDB All DBs
Position
complement(121185..122981)
Genome map
AA seq 598 aa AA seqDB search
MKFKLIAEYFDRLEKISSRIQLTSLLSDLFKNTEREVIDKVVYLIQGRLWPDFTGMPEIG
MGEKFLIKAIAMAYGNKEEEVEKLYKNIGDLGEVAYSLRSKVKGVSILSFVGGNQEAGEL
DVMEVYNELVKIATSTGEGSRDIKIRIFAGLIKKATPIEAKYLVRFVEGRLRLGIGDATV
LDALAITFGGSADYRPIVERAYNLRADLGDIARVIATEGIEKLKNISPTPGIPIRPMLAE
RLPDPEEIMEKMNGKALVDYKYDGERAQIHRKGDKVTIFSRRMENITDQYIDVTEYVKQF
VKGDNFIVEGEIVPVDPESGEMRPFQELMHRRRKNNIAEAIKEYPVNLFLFDLMFFEGED
YTTKPLPERRAKLEEILASNDKVHIASHIIADRVDKLREYFYQAISEGAEGVMVKSIGPD
SIYQAGSRGWLWIKLKRDYQSEMADTVDLVVVGAFYGKGKRGGKFSSLLMAAYNPEKDVF
ETVCKVASGFSDQELDEMQKKINELKREQKHPRVVSDMIPDVWVSPTLVAEVIGAEITIS
PLHTCCRGEKGGLSIRFPRFIRWRDDKSPEDATTNQEIMEMYSKQLKKIEEKPVDENI
NT seq 1797 nt NT seq  +upstreamnt  +downstreamnt
atgaagtttaagcttatcgcagagtatttcgacagacttgagaaaatatcctctagaata
cagctaacatctcttctttcggacctctttaagaacactgaaagggaagtgatagataag
gtagtgtaccttatccagggaaggctctggccagactttacaggaatgcctgagatagga
atgggagagaaatttctgattaaggcaatagcaatggcctatggaaataaggaagaggaa
gttgaaaaactatacaagaatataggtgatctaggtgaagttgcctattccttgaggagt
aaggtaaagggcgtgagcattctctcattcgtcggaggaaatcaggaggccggagaactt
gacgtgatggaggtatataacgagctagtaaagatagccactagcactggggagggaagc
agggacattaagataaggattttcgctggtctgataaagaaggcaacccccatagaggcc
aagtatctcgtcagatttgttgaggggaggctaaggctagggataggagatgcgacggta
ctggatgcgttggccataacctttggtggatctgcagactataggccaatagtcgaaagg
gcatacaacttaagggctgaccttggcgatatagccagagtaatagctactgagggaata
gagaaactgaagaatatttccccaacccctgggattccaatcagaccaatgttggctgaa
aggttgcccgatccagaggagataatggagaaaatgaacggaaaggcgctagtggactac
aaatatgatggtgagagggctcagattcatagaaagggagataaggtcaccattttctct
agacgaatggaaaatataactgaccagtacattgatgtaacagagtacgtgaaacaattc
gttaagggtgacaacttcattgtggagggtgagattgtacctgttgatccagagagcggt
gaaatgagacccttccaagagcttatgcataggagaaggaaaaataacatagcggaagcc
ataaaggaatatccggtcaacctattcctctttgatctaatgttctttgagggagaggat
tacaccacgaagcctctcccagagaggagggccaaacttgaggagattcttgcaagtaac
gacaaggttcatatcgcgtcacatataattgctgatagagtggataagctaagggagtac
ttctatcaagcaatatctgagggtgcagagggagttatggttaagtcgattggaccagac
tccatataccaggcagggtccagagggtggctatggataaagttaaagagggattaccag
agcgaaatggctgatacggtagatctagtggtagttggtgccttttacggtaagggtaaa
aggggaggtaagtttagctccttgcttatggcagcttacaacccagagaaggatgtgttt
gagacggtttgtaaggttgcctctggtttcagtgaccaggaactagatgagatgcagaag
aagataaacgaactcaagagggagcagaagcatccaagggttgtatccgacatgatccct
gatgtctgggtatcgccaaccctagtagctgaggtgataggtgccgaaatcacgatttct
cccttgcatacctgttgcagaggcgaaaaaggaggactatccatacgtttcccaagattt
atcagatggagggatgacaaaagtccagaggatgctaccactaaccaggagataatggag
atgtactcgaaacagctcaagaaaatagaggaaaaacctgtagatgaaaatatctag

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