KEGG   Methylocella silvestris: Msil_1736Help
Entry
Msil_1736         CDS       T00802                                 

Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
msl  Methylocella silvestris
Pathway
msl03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:msl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Msil_1736
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:msl03400]
    Msil_1736
Enzymes [BR:msl01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Msil_1736
DNA repair and recombination proteins [BR:msl03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Msil_1736
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID: ACK50682
UniProt: B8EKE2
LinkDB All DBs
Position
complement(1886469..1889135)
Genome map
AA seq 888 aa AA seqDB search
MADTKLKTYRAKRDFAQTAEPSGEAPIAAGPRRRFVIQKHAATRLHYDLRLELDGVFKSW
AVTKGPSLDPHDKRLAVEVEDHPLDYGDFEGVIPKGQYGGGTVQLWDRGFWAPEGDKTPE
QALADGDLKFTLDGQRLYGSWVLVRMKADRTGGKRTNWLLIKHRDGYARDGDADALLAED
RSVASGRAMAAIAAGKGKGPKPFMLAGEQAADPKAVWDSNKGLAAEARAAPKATRKKSGA
ALAQMPDFLPPQLCQPVERPPSGDGWVHEIKFDGYRMQLRVAGGKATLKTRKGLDWTDKF
AAIAAEAADFPDAIIDGEIVALDSSGSPDFVALQAALSEQNTDDLIFYAFDLMFEGGRDL
RLEPLAARKQALARLIAGARLGAGALIRFVEHFETGGDAILQSACRLNLEGIVSKKRDAP
YQPGRSDSWTRAKCRAGHEVVIGGWTTTEGKFRSLLAGVHHGENFTYIGRIGTGFGEAKV
KTLLPKLKQFAAETSPFTGPSAPRKTASIHWLKPELVAEIEFAGFTGAGMVRQAAFKGLR
EDKPAEEVEAETPAPPEQAAVPDPAEIQASARSSSDKPMATANGKPIVMGVAISNPAKEL
WPADGAEAPVSKLDLARYYEAAGPWLIEHVRGRPCSLIRAPDGITGQQFFQRHAMAGASN
LLDLVTVSGDRAPYLQIDRVEGLAAVAQIAGLELHPWNCAPGRPETPGRLIFDLDPGPDV
AFEQVAAAALEMRDRLDALGLVSFCKTTGGKGLHVVTPLAVAKGSKLTWPEAKGFAQEVC
RRMAADNSNAYLLNMSKKLRAGRIFLDYLRNDRMSTAVAPLSPRARPGATVSMPLNWSEA
TNSLDPKAFTIRTSVGLLDKSKAWADYDSGARPLEAAIKRLGRAKAAA
NT seq 2667 nt NT seq  +upstreamnt  +downstreamnt
gtggcggacaccaagctcaaaacctatcgcgccaagcgcgactttgctcaaacggcggaa
ccgagcggagaggctccgatcgcggccggaccgcgtcggcgcttcgtcatccagaaacat
gccgcaacccggctccattacgatcttcgactggagctcgacggagtcttcaaatcatgg
gctgtcaccaagggcccctcgctcgatccgcatgacaagcgccttgcagttgaggtcgag
gatcatccgctcgactatggcgatttcgaaggcgtgatccccaaaggccaatatgggggc
ggcacggtccagctgtgggatcgcgggttctgggcgccggagggcgacaagacgcctgaa
caggcgctggccgacggcgatctcaaattcacgctcgacggccaaaggctgtatggcagt
tgggtgctcgtgcgcatgaaggccgaccgcacgggcggcaaacgaaccaattggctgctc
atcaaacatcgcgacggctacgcgcgggatggcgacgccgacgctctgctggcggaggac
cgctccgtcgcttcgggccgcgcgatggcggcgatcgcggccggcaagggcaaggggcca
aagcctttcatgctcgcgggcgagcaagccgccgatccgaaagcggtgtgggactcgaac
aaggggctcgccgccgaggcgcgcgcggcgcccaaggccacgcggaaaaaatctggcgcg
gctttggcgcaaatgccggatttcctgccgccgcagctttgccagccggtcgagcggccg
ccttcgggcgacggttgggttcatgaaatcaaattcgacggctatcgcatgcagcttcgc
gtcgccggcggcaaagcgacgctgaaaacgcgcaaggggctggactggaccgataaattc
gcggcgatcgctgcggaggcggcggatttccccgacgctatcatcgatggcgagatcgtc
gcgctggatagctcgggctcgcccgatttcgtggcgctgcaggcggcgctttcagaacag
aataccgatgatctgattttctacgccttcgacctgatgttcgagggcgggagagatttg
cggctcgagccgctcgccgcgcgcaagcaggcgttggcgcgtctcatagccggcgcgcgg
cttggcgcgggcgcgctgatccgtttcgtcgagcacttcgagaccggcggcgacgcgatt
ttgcaatccgcctgccgcctcaatctggaaggcatcgtttcaaagaaacgcgacgcgccc
taccagcccggccgctccgacagctggaccagggcgaagtgccgcgccggccacgaggtg
gtgatcggcggatggacgaccacggaggggaaattccgctccctgttggcgggcgtccat
cacggcgagaatttcacctatatcggccgcatcggaacggggttcggcgaagccaaggtc
aaaaccctgctgccgaagctgaagcagttcgcggcggagacatcgcccttcaccgggccg
agcgcgccacgcaaaaccgcttcgatccattggctgaagccggagctcgtcgccgagatt
gagtttgcggggtttacaggcgccggcatggtgcggcaggcggccttcaaagggctgcgc
gaagacaagccggccgaagaggtcgaagccgagacgccggccccgccggagcaagctgct
gttcccgatcccgcagagattcaggcgagcgcgcgttcatcctcggataagcccatggcg
acggccaacggcaaacccatcgtcatgggcgtcgccatctccaacccggcgaaggagttg
tggccggctgacggcgccgaagctccggtctcgaaactcgatctggcgcgctattacgaa
gcggccggtccctggctcatagagcatgtgcgcggcaggccttgctcgctcatccgcgcg
cccgacgggatcactggccagcaattctttcagcgccacgccatggccggagcctcgaac
ctgctcgatcttgtgaccgtgtcgggcgatcgcgcgccctatctgcagatcgaccgtgtt
gagggattggcggcggtggcgcaaatcgctgggcttgagctgcatccgtggaactgcgcg
ccggggcgcccggagacgcccgggcggctgatattcgatctcgaccccggccccgacgtc
gccttcgagcaggtggcagccgccgctcttgagatgcgcgacaggctcgacgcgctgggg
ctcgtcagtttctgcaagacgacgggcggcaaggggctgcatgtcgtcacgccgctggcg
gtcgccaagggctccaaactcacctggcccgaggcgaaggggttcgctcaggaggtctgc
cggcgcatggccgcggacaattcgaacgcctatctcctcaacatgtccaaaaagcttcgc
gcggggcgtattttcctcgactacctgcgcaatgaccgcatgtcgacggccgtcgcgccg
ctgtcgccacgcgcgcgtccgggcgccacggtttcgatgccgctgaactggagcgaggcg
accaacagcctcgatccgaaagcctttacgatccgcacgtccgttgggcttctcgacaag
agcaaagcctgggccgactatgattcgggcgcgcgtccgctggaggcggcgatcaaacgc
ctcggccgcgccaaggcggccgcgtga

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