Mycolicibacterium gilvum Spyr1: Mspyr1_29790
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Entry
Mspyr1_29790 CDS
T01376
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
msp
Mycolicibacterium gilvum Spyr1
Pathway
msp03030
DNA replication
msp03430
Mismatch repair
msp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
msp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Mspyr1_29790
03430 Mismatch repair
Mspyr1_29790
03440 Homologous recombination
Mspyr1_29790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
msp03032
]
Mspyr1_29790
03400 DNA repair and recombination proteins [BR:
msp03400
]
Mspyr1_29790
Enzymes [BR:
msp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Mspyr1_29790
DNA replication proteins [BR:
msp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Mspyr1_29790
DNA repair and recombination proteins [BR:
msp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Mspyr1_29790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
Motif
Other DBs
NCBI-ProteinID:
ADT99598
UniProt:
E6TBF0
LinkDB
All DBs
Position
complement(3094171..3097722)
Genome browser
AA seq
1183 aa
AA seq
DB search
MSGSFVHLHNHTEYSMLDGAAKVKPMLAEAQRLEMPAIGMTDHGNMFGASEFYNAATDAG
IKPIIGIEAYIAPASRFDTKRVLWGDPGQKSDDVSGSGSYTHMTMVAENATGLRNLFKLS
SLASFEGQLGKWSRMDAEIIAEHAEGIIATTGCPSGEVQTRLRLGHDREALEAAARWREI
FGPENFFLELMDHGLDIERRVREGLLEIGQKLGIPPLATNDCHYVTRDASQNHEALLCIQ
TGKTLSDPNRFKFDGDGYYLKSAAEMRALWDGQVPGACDSTLLIAERVQPYTDVWAPKDR
MPVFPVPEGHDQGSWLTHEVMAGLERRFSAAAGGQVPPEYIERADYEIKVICDKGFPAYF
LIVADLINYAKSVGIRVGPGRGSAAGSLVAYAMGITNIDPIPHGLLFERFLNPERPSAPD
IDIDFDDRRRGEMLRYAANKWGSDRVAQVITFGTIKTKAALKDSARVHYGQPGFAIADRI
TKALPPPIMAKDIPVSGITDPTHERYKEAAEVRALIDTDPDVRTIYETARGLEGLVRNAG
VHACAVIMSSEPLIDAIPLWKRPQDGAVITGWDYPSCEAIGLLKMDFLGLRNLTIIGDCI
ENIKANRGVDVDLESLALDDPKAYELLGRGDTLGVFQLDGSAMRDLLRRMQPTEFNDIVA
VLALYRPGPMGMNAHNDYADRKNGRQPIKPIHPELEEPLKDILAETYGLIVYQEQIMFIA
QKVASYSMGKADALRKAMGKKKLEVLEAEYKGFKEGMTANGFSEGAVKALWDTILPFAGY
AFNKSHAAGYGLVSYWTAYLKANYQAEYMAGLLTSVGDDKDKAAIYLADCRRLGITVLPP
DVNESVQNFASVGDDIRFGLGAVRNVGANVVASLVSTREEKGKYTDFSDYLNKIDITACT
KKVTESLIKAGAFDSLGHPRKGLFLVHTDAVDSVLGTKKAEAMGQFDLFGGGDDDGDTGD
SAFTIKVPDEEWEDKHKLALEREMLGLYVSGHPLNGIAHLLTAQVDTQIPAILEGAIPND
AQVRVGGILASVNRRVNKNGLPWASAQIEDLSGGIEVLFFPQTYSMFGAEIADDVVVLVG
AKVAKRDDRISLIANELIVPDFTSAQVNRPVAVSLPTRQCTVDKVTALKQVLARHPGTAQ
VHLRLISGERITTLELDQSLRVTPSSALMGDLKELLGPGCLGG
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
atgagcgggtcattcgtgcatctccacaaccacaccgagtactcgatgctggacggcgcc
gcgaaggtgaagccgatgctggccgaggcgcagcggctggagatgcccgcgatcgggatg
accgaccacggaaacatgttcggcgccagcgagttctacaacgccgccaccgacgccggg
atcaagccgatcatcggcatcgaggcctacatcgcgcccgcgtcgcggttcgacaccaag
cgggtgctgtggggcgacccgggtcagaagagtgacgacgtgtcgggcagcggctcctac
acgcacatgacgatggtcgccgagaacgcgaccgggttgcgcaacctgttcaagctgtcg
tcgctggcgtcgttcgagggccagctcggcaagtggtcccggatggacgccgagatcatc
gccgagcacgccgagggcatcatcgccaccaccggttgcccgtcgggggaggtacagacg
cggctgcgactgggccacgaccgcgaggctctcgaggccgccgcccgatggcgcgagatc
ttcggcccggagaacttcttcctggagttgatggaccacggcctcgacatcgagcgccgg
gtccgcgagggcttgctggagatcggtcagaagctcggcatcccgccgctggccaccaac
gactgccactacgtcacccgcgacgcgtcccagaaccatgaggcgctgctgtgcatccag
accggcaagacgctgtcggatcccaaccgcttcaagttcgacggcgacggctactacctg
aagtccgcggcggagatgcgcgcgctgtgggacggccaggtgccgggtgcatgcgattcg
acgctgctgatcgccgaacgggtgcagccctacaccgacgtgtgggcgccgaaggaccgg
atgccggtcttcccggtgcccgaggggcacgatcaggggtcgtggctcacccacgaggtg
atggcggggctggagcgccgcttcagcgccgcggcgggcgggcaggtgccgccggagtac
atcgagcgcgccgactacgagatcaaggtcatctgcgacaagggtttcccggcctacttc
ctcatcgtggccgatctgatcaactacgcgaagtccgtcggcatccgggtcgggccgggc
cgcggttcggcggcgggctcgctggtcgcgtacgcgatgggcatcaccaacatcgacccg
attccgcacgggctgctgttcgagcgcttcctgaaccccgaacgcccgtcggctcccgac
atcgacatcgacttcgacgaccgtcgccgcggtgagatgctgcgctacgccgccaacaag
tggggcagcgaccgggtggcccaggtcatcacgttcggcaccatcaaaacgaaagccgcg
ctgaaggattcggcccgcgtgcactacgggcagccgggcttcgcgatcgccgaccggatc
accaaggcgctaccgccgccgatcatggccaaggacatcccggtctcgggcatcaccgat
cccacgcacgagcggtacaaggaggccgccgaggtccgcgcgttgatcgacaccgatccc
gacgtgcgcaccatctacgagaccgcccggggtctcgaaggcctcgtccgcaacgccggt
gtgcacgcctgcgcggtgatcatgagttccgagccgctcatcgacgcgatcccgctgtgg
aaacgcccgcaggacggtgcggtgatcaccgggtgggactacccgtcgtgtgaggccatc
ggcctgctgaagatggacttcctcgggctgcggaacctgacgatcatcggggactgcatc
gagaacatcaaggccaacagaggcgtcgacgtcgacctggagtcgctggcgctcgacgac
ccgaaggcctacgagctgctgggccgcggcgacacgctcggggtgttccagctcgacggc
agcgcgatgcgggatctgctgcgccggatgcagccgaccgagttcaacgacatcgtcgcc
gtgctggcgctgtaccggcccggtccgatgggcatgaacgcccacaacgactatgccgac
cgcaagaacggccgccagccgatcaagccgatccaccccgagctcgaagaaccgctcaag
gacatcctggccgagacctacggcctgatcgtctaccaagagcagatcatgttcatcgcg
cagaaggttgcctcgtactcgatgggcaaggccgatgcgctgcgtaaagccatgggcaag
aagaagctcgaggtgctcgaagccgagtacaagggcttcaaggagggcatgacggccaac
gggttctccgagggcgcggtgaaggccctgtgggacaccatccttccgttcgccggctac
gcgttcaacaagtcgcatgcggcgggctacggtctcgtgtcgtactggacggcctatctg
aaggcgaactatcaggctgagtacatggcgggcctgctcacctcggtcggagacgacaag
gacaaggcggccatctacctggcggactgccggcgtctcggcatcacggtgctgccgccc
gacgtcaacgaatccgtgcagaacttcgcctcggtcggtgacgacatccgcttcggcctg
ggcgccgtgcgcaacgtcggggccaatgtcgttgcctcccttgtgagtacacgtgaggag
aagggcaagtacaccgacttctccgactacctcaacaagatcgacatcaccgcctgcacc
aagaaggtgacggagtcgctgatcaaggcgggtgcgttcgactcgctcggtcatccccgc
aaaggcctgttcctggtgcacaccgacgccgtcgactcggtgctcggcaccaagaaggcc
gaggcgatggggcagttcgacctcttcggcgggggtgatgatgacggggataccggtgac
tctgcgttcacgatcaaggtgcccgacgaggagtgggaggacaagcacaagctggccctc
gagcgcgagatgctcgggctctacgtgtccggccatccgctcaacggcatcgcccatctg
ctgaccgcgcaggtcgacacccagatcccggcgatcctggagggtgcgatccccaacgac
gcgcaggtgcgcgtcggcggcatcctggcctcggtcaaccgccgcgtgaacaagaacggc
ctgccctgggcgtcggcgcagatcgaggatctctccggtggcatcgaggtgctgttcttc
ccgcagacgtactcgatgttcggcgccgagatcgccgatgacgtggtggtgctggtcggc
gcgaaggtggccaaacgcgacgaccggatctcgctgatcgccaacgaactgatcgtgccg
gatttcaccagtgcccaggtgaatcggccggtggcggtgagcctgccgacgcgccagtgc
accgtggacaaggtgacggcgctcaagcaggtgctggcacgccatccgggtaccgctcag
gtccacctgcggttgatcagcggggagcggatcacgacgctggagctggaccagtcgctg
cgggtcacaccgtcgtcggcgttgatgggtgatctgaaggagcttctggggccgggctgc
ctgggaggctga
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