KEGG   Mycobacterium stephanolepidis: MSTE_01004Help
Entry
MSTE_01004        CDS       T05257                                 

Definition
(GenBank) putative ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
mste  Mycobacterium stephanolepidis
Pathway
mste03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:mste00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    MSTE_01004
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mste03400]
    MSTE_01004
Enzymes [BR:mste01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     MSTE_01004
DNA repair and recombination proteins [BR:mste03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     MSTE_01004
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: BAX96338
UniProt: A0A1Z4ETP1
LinkDB All DBs
Position
986343..988619
Genome map
AA seq 758 aa AA seqDB search
MRLTNADKVLYPPTGTTQATTKADVFGYYTAVAPFMLPHLAGRPVTRKRWPNGVEQPSFF
EKDLASSAPDWLPRRRIEHKSRYVTYPLIDTSVALAWIAQQAALEVHVPQWRFVGENPGP
ATRLVFDLDPGDGVDLPKLAQVARAVRDVLDDIGLTTFPLTSGSKGLHLYVPLAQPVSSS
GAVTVARKVAMQLEQSMPDLVTATMTRDLRSGKVFVDWSQNSGSKTTVAPYSLRGREAPT
VAAPRTWDELDDPELRQLRFDEVLARAERDGDLLAGLDDAAIVEDRLSTYRSMRDPARTP
EPVPAVEPQAGRDSSFVIQEHHATALHYDFRLERDGVLVSWAVPKNLPMEPSVNHLAVHT
EDHPLEYGTFEGAIPKGEYGAGEVTIWDSGTYDTEKFIDPRDGSSADGGSKGEVIVTLHG
KRISGRYALIQTDGKQWLAHRMKDQRSPGAMPVGLAPMLPTTGSVAGLTADEWAFEGKWD
GYRLILECDHGRLRAVARSGRDVTEEFPALQQLARELAEHRVVLDGEVVVLDSKGRPSFS
LLQNRTPSADVRFWAFDLLYLDGKSLLRTKYRDRRRLLDVLGAGAEMMTVPEQLNGDGDA
ALAHSHERGWEGVVAKRLDSAYAPGRTQSWIKAKNWRSQEIVICGWRKGQGGRSSGIGAL
LMGIPASDGLRYAGRVGTGFTEKELASLKEQLKPLHCDESPFSAPLSAVEAKDVQFVEPV
LVAEVRYGDRTPGGILKHSSWRGLRTDKSVGDVELDLG
NT seq 2277 nt NT seq  +upstreamnt  +downstreamnt
gtgcgcctcaccaatgcggacaaggtgctctatccgccaactggaaccactcaggccacc
accaaggcggacgtattcggctactacaccgccgtcgcaccattcatgctgccgcacctc
gcggggcgcccggtcacccgtaagcgctggcctaatggcgttgagcagccgtccttcttc
gagaaggacctggcgtcgtcggcccccgattggcttccccggcgacgcatcgagcacaaa
tcccgctacgtcacctacccgttgatcgacacctcggtagcgctggcctggatagctcag
caggcggcactggaagtgcatgtgccccaatggcggtttgtcggcgaaaatccggggccg
gcaacacgattggtattcgatctggatccgggcgacggcgtggacctaccgaaactggcg
caggtcgcccgcgcggtgcgcgatgtactcgacgatatcggtctgaccacctttcccttg
accagtggcagcaaggggctgcacctgtatgtgccgctggcgcagccggtcagctcatcc
ggtgcggtgaccgtcgcgagaaaggtcgcgatgcaactggagcagtcgatgccggatctg
gtcaccgcgacgatgacccgggacctgcggtcgggcaaggttttcgtggattggagtcag
aacagcggttccaagactacggttgccccctactcgctgcgtggccgcgaggcgccgact
gttgccgcgccccgtacgtgggacgaattggacgacccagagttgcgccagttgcggttt
gatgaagtactggcgcgtgccgagcgcgacggtgatctgctggcaggactcgacgatgcg
gcgattgtcgaagacaggctgtctacataccgcagcatgcgcgatccggcgcgtactccc
gaaccggtacccgccgtcgaaccgcaagcaggtcgcgatagttcgtttgtgatccaggaa
catcacgccaccgcgctgcactacgactttcggttagagcgtgacggtgtgctggtctcg
tgggcggtccccaagaatctgcccatggagccgtccgtcaatcatcttgcggtgcatacc
gaggatcaccccctcgaatacggaaccttcgagggcgccattccgaagggggagtacggc
gccggtgaggtgaccatctgggactcgggaacctatgacaccgagaagttcatcgatccg
cgcgacggctccagcgccgacggcgggtcaaagggagaagtcattgtcacactgcatggc
aagcgaatctcgggacggtacgcgctgattcaaaccgatggcaagcagtggctggcgcac
cgcatgaaggatcagcgatctcctggtgcaatgccggttggcctcgcgccgatgctgccg
actaccggatccgtggcgggcctgaccgccgacgagtgggcattcgagggaaaatgggac
ggttaccgcctcatcctcgaatgcgaccacggtcggctgcgggccgtggcgcgcagcggg
cgcgatgtcaccgaggagttcccggccttgcagcagctcgcccgggaattggccgagcac
cgtgtggttctcgatggtgaggtggtggtgctggattccaaggggcggccgagtttctcg
ttgttacagaatcggacaccgagtgccgatgtccgattctgggcgtttgatctgctgtat
ctggatggaaaatccctgctgcgcaccaagtatcgtgaccggcgccgcctgctcgacgtg
ctgggggccggcgccgagatgatgaccgttccggaacaactgaacggcgacggagatgcg
gcgctggctcattcgcatgagcggggctgggagggtgtcgtcgccaaaaggctggattcg
gcttatgctccgggccgcacccagtcctggatcaaggcgaagaactggcgcagccaagag
atcgtgatctgcggttggcgtaaggggcagggcggacgcagcagcgggatcggcgctctg
ctgatggggataccggcgtccgacgggcttcgttatgcggggcgggtgggcaccggattc
acggagaaggagctggcatcgctcaaggagcagctcaagccgttgcactgcgatgaatca
cccttcagcgcgccgctttccgcggtcgaggccaaagatgtgcagttcgtcgaaccggtc
ctggtcgccgaggttcgctacggcgaccgcacgcccggcgggattctcaagcattccagt
tggcgtggtctgcgcaccgacaagtcagttggcgacgtcgagctcgatctcgggtaa

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