Mycobacterium stephanolepidis: MSTE_01004
Help
Entry
MSTE_01004 CDS
T05257
Name
(GenBank) putative ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mste
Mycobacterium stephanolepidis
Pathway
mste03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mste00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MSTE_01004
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mste03400
]
MSTE_01004
Enzymes [BR:
mste01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MSTE_01004
DNA repair and recombination proteins [BR:
mste03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MSTE_01004
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
BAX96338
UniProt:
A0A1Z4ETP1
LinkDB
All DBs
Position
986343..988619
Genome browser
AA seq
758 aa
AA seq
DB search
MRLTNADKVLYPPTGTTQATTKADVFGYYTAVAPFMLPHLAGRPVTRKRWPNGVEQPSFF
EKDLASSAPDWLPRRRIEHKSRYVTYPLIDTSVALAWIAQQAALEVHVPQWRFVGENPGP
ATRLVFDLDPGDGVDLPKLAQVARAVRDVLDDIGLTTFPLTSGSKGLHLYVPLAQPVSSS
GAVTVARKVAMQLEQSMPDLVTATMTRDLRSGKVFVDWSQNSGSKTTVAPYSLRGREAPT
VAAPRTWDELDDPELRQLRFDEVLARAERDGDLLAGLDDAAIVEDRLSTYRSMRDPARTP
EPVPAVEPQAGRDSSFVIQEHHATALHYDFRLERDGVLVSWAVPKNLPMEPSVNHLAVHT
EDHPLEYGTFEGAIPKGEYGAGEVTIWDSGTYDTEKFIDPRDGSSADGGSKGEVIVTLHG
KRISGRYALIQTDGKQWLAHRMKDQRSPGAMPVGLAPMLPTTGSVAGLTADEWAFEGKWD
GYRLILECDHGRLRAVARSGRDVTEEFPALQQLARELAEHRVVLDGEVVVLDSKGRPSFS
LLQNRTPSADVRFWAFDLLYLDGKSLLRTKYRDRRRLLDVLGAGAEMMTVPEQLNGDGDA
ALAHSHERGWEGVVAKRLDSAYAPGRTQSWIKAKNWRSQEIVICGWRKGQGGRSSGIGAL
LMGIPASDGLRYAGRVGTGFTEKELASLKEQLKPLHCDESPFSAPLSAVEAKDVQFVEPV
LVAEVRYGDRTPGGILKHSSWRGLRTDKSVGDVELDLG
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
gtgcgcctcaccaatgcggacaaggtgctctatccgccaactggaaccactcaggccacc
accaaggcggacgtattcggctactacaccgccgtcgcaccattcatgctgccgcacctc
gcggggcgcccggtcacccgtaagcgctggcctaatggcgttgagcagccgtccttcttc
gagaaggacctggcgtcgtcggcccccgattggcttccccggcgacgcatcgagcacaaa
tcccgctacgtcacctacccgttgatcgacacctcggtagcgctggcctggatagctcag
caggcggcactggaagtgcatgtgccccaatggcggtttgtcggcgaaaatccggggccg
gcaacacgattggtattcgatctggatccgggcgacggcgtggacctaccgaaactggcg
caggtcgcccgcgcggtgcgcgatgtactcgacgatatcggtctgaccacctttcccttg
accagtggcagcaaggggctgcacctgtatgtgccgctggcgcagccggtcagctcatcc
ggtgcggtgaccgtcgcgagaaaggtcgcgatgcaactggagcagtcgatgccggatctg
gtcaccgcgacgatgacccgggacctgcggtcgggcaaggttttcgtggattggagtcag
aacagcggttccaagactacggttgccccctactcgctgcgtggccgcgaggcgccgact
gttgccgcgccccgtacgtgggacgaattggacgacccagagttgcgccagttgcggttt
gatgaagtactggcgcgtgccgagcgcgacggtgatctgctggcaggactcgacgatgcg
gcgattgtcgaagacaggctgtctacataccgcagcatgcgcgatccggcgcgtactccc
gaaccggtacccgccgtcgaaccgcaagcaggtcgcgatagttcgtttgtgatccaggaa
catcacgccaccgcgctgcactacgactttcggttagagcgtgacggtgtgctggtctcg
tgggcggtccccaagaatctgcccatggagccgtccgtcaatcatcttgcggtgcatacc
gaggatcaccccctcgaatacggaaccttcgagggcgccattccgaagggggagtacggc
gccggtgaggtgaccatctgggactcgggaacctatgacaccgagaagttcatcgatccg
cgcgacggctccagcgccgacggcgggtcaaagggagaagtcattgtcacactgcatggc
aagcgaatctcgggacggtacgcgctgattcaaaccgatggcaagcagtggctggcgcac
cgcatgaaggatcagcgatctcctggtgcaatgccggttggcctcgcgccgatgctgccg
actaccggatccgtggcgggcctgaccgccgacgagtgggcattcgagggaaaatgggac
ggttaccgcctcatcctcgaatgcgaccacggtcggctgcgggccgtggcgcgcagcggg
cgcgatgtcaccgaggagttcccggccttgcagcagctcgcccgggaattggccgagcac
cgtgtggttctcgatggtgaggtggtggtgctggattccaaggggcggccgagtttctcg
ttgttacagaatcggacaccgagtgccgatgtccgattctgggcgtttgatctgctgtat
ctggatggaaaatccctgctgcgcaccaagtatcgtgaccggcgccgcctgctcgacgtg
ctgggggccggcgccgagatgatgaccgttccggaacaactgaacggcgacggagatgcg
gcgctggctcattcgcatgagcggggctgggagggtgtcgtcgccaaaaggctggattcg
gcttatgctccgggccgcacccagtcctggatcaaggcgaagaactggcgcagccaagag
atcgtgatctgcggttggcgtaaggggcagggcggacgcagcagcgggatcggcgctctg
ctgatggggataccggcgtccgacgggcttcgttatgcggggcgggtgggcaccggattc
acggagaaggagctggcatcgctcaaggagcagctcaagccgttgcactgcgatgaatca
cccttcagcgcgccgctttccgcggtcgaggccaaagatgtgcagttcgtcgaaccggtc
ctggtcgccgaggttcgctacggcgaccgcacgcccggcgggattctcaagcattccagt
tggcgtggtctgcgcaccgacaagtcagttggcgacgtcgagctcgatctcgggtaa
DBGET
integrated database retrieval system
