Methanosarcina siciliae HI350: MSSIH_3008
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Entry
MSSIH_3008 CDS
T03864
Name
(GenBank) 3'-to-5' exoribonuclease RNase R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
msz
Methanosarcina siciliae HI350
Pathway
msz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSSIH_3008
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msz03019
]
MSSIH_3008
03016 Transfer RNA biogenesis [BR:
msz03016
]
MSSIH_3008
Enzymes [BR:
msz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
MSSIH_3008
Messenger RNA biogenesis [BR:
msz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MSSIH_3008
Transfer RNA biogenesis [BR:
msz03016
]
Prokaryotic type
tRNA degradation factors
MSSIH_3008
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNB
dsrm
DND1_DSRM
Motif
Other DBs
NCBI-ProteinID:
AKB33698
UniProt:
A0A0E3PH28
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All DBs
Position
3815241..3816965
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AA seq
574 aa
AA seq
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MDDAIWVEITENGGWHVVVMISDVSKAVPGHSELDQLAMSRVETRYYATGNSPMLPRRFA
DEKLSLWPGEEKSVLVVDIILDMDLSILETKLLRTVINSEARLSFSDIPPIISDRGHPQH
DIVKLASQLADDLLTQRRNRGALAFYNLRRGLVTNEEGSLRQLKRREDTIGYVIIQELMI
LANMAVAEYAVKNDIPILFRNHTARSATPERGDLMKLLESVAVIPEENIATLRSTTYMMF
NRAEYGPVILGHFGLNLGAYTHFTSPIRRYADLVNHQQIRAYIRNEPLPHSKEELQAIAS
HINLRRLENDRDKSAYMKKKAYKKAESIVLENRISDASDKDFERITKFLIRQGEDCPEAY
SDAFRKRSGELPVICAGLVLLQAPDGKRWTELKKALLEEMATASHKAVSIFDIAQHIQGW
QMPVYDVTETARSKLPVFTARSTILIENKEYRSAAYEDTTKKGAIQRASVDLLANILGLP
APDLKITIASLPASKEEVTINTSKDPIFALQEYCQAKKFPLPAYSYETKGPTNKPTFTCT
CTFGSLTSTEQAGKKQRAKRLAARSMIYMLVSEN
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atggatgacgcaatatgggtggaaattacggaaaacggcggctggcacgtcgttgttatg
atctcagatgtttcaaaggcagtccccgggcattcagagcttgatcagcttgcgatgtcc
agagtcgagaccaggtattatgcaaccggtaacagcccgatgttgccccggcggttcgca
gatgagaaactttccctatggccgggagaagagaaatctgtcctcgttgtagatatcatc
ctcgacatggatctgtcgatcctagaaacaaagcttttgaggactgtgataaacagtgaa
gcccggctctctttctctgacatccctcccattatctctgatcgggggcacccgcagcac
gatatagtcaaacttgcaagccagctcgcagacgaccttttgacgcagcgccgtaaccgt
ggagcgcttgcattctacaatttgaggcgggggcttgtgacgaatgaggaagggtcacta
cggcaactgaaacgcagggaagataccatcggctatgttatcattcaggaactgatgatt
ctcgctaacatggccgtagcagagtatgcggtcaaaaatgacattcctatccttttccgc
aaccatacggcccggagcgccactcctgagcgaggtgacttgatgaagctgctcgaaagc
gtggctgttattcccgaggaaaacatagctaccctcagaagtacaacatatatgatgttc
aacagagctgaatatgggcctgtcatcctgggccatttcggactgaacctcggagcgtat
acccacttcacctcgcccatccgaagatatgccgatctcgtaaaccaccaacagatccga
gcctacatccggaacgagcccttaccccactctaaagaagaacttcaagcaattgcatcg
cacatcaacctgaggcggcttgaaaacgatagggataaaagcgcgtacatgaagaaaaag
gcgtataaaaaagctgagtcgatcgttctggagaatcggataagcgatgcaagcgataaa
gacttcgagcgcatcaccaaattcctgatccgccagggggaggactgcccggaggcctac
agtgatgcttttcggaaacgctctggcgaactgccggtcatctgtgcagggctggtactc
ctgcaagcccctgatggcaaaagatggactgaacttaaaaaagcattgctggaggaaatg
gcaactgcatctcacaaagctgtctcgatcttcgacatcgcacaacatatacagggctgg
cagatgcccgtatacgacgtgacagaaactgcccggagcaagctgccggtattcactgcc
cggagcaccattttaatcgagaacaaagagtaccggtccgccgcatacgaggacacgaca
aaaaaaggtgccattcagcgggcatccgtagacctgctcgcaaatattttaggcttacct
gctccggacttgaaaattacgatagcaagcttgccggcaagcaaagaagaggtaacaatt
aacacgtcaaaagacccgatttttgccctgcaggagtactgccaggcaaagaaatttccc
ttgccagcttattcatatgagacaaaaggcccgaccaataagccgaccttcacctgtacc
tgtacctttggctccctgaccagcaccgaacaggcaggaaaaaagcaaagggccaagcgg
ctagcagctagatcgatgatatacatgttagtatccgagaattga
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