KEGG   Massilia oculi: DIR46_02775Help
Entry
DIR46_02775       CDS       T05448                                 

Gene name
ligD
Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
mtim  Massilia oculi
Pathway
mtim03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:mtim00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    DIR46_02775 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mtim03400]
    DIR46_02775 (ligD)
Enzymes [BR:mtim01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     DIR46_02775 (ligD)
DNA repair and recombination proteins [BR:mtim03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     DIR46_02775 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: AWL03485
UniProt: A0A2S2DDR0
LinkDB All DBs
Position
complement(608184..610742)
Genome map
AA seq 852 aa AA seqDB search
MPDALKVYKAKRNFTITSEPAEGGTPGLDALTFVIQKHWASRLHYDFRLELDGTMKSWAV
PKGPSYDTHDKRMAVHVEDHPISYSDFEGTIPAKQYGAGKVIIWDKGTWEPLEDPHKGFA
KGSIKFEMHGHKMRGRWTLVRMKGRGNEKQEPWLLIKEKDEYARSSEEFSLVDEMPDSVK
DLPMPGRVQRKVDALRADEEAAPAPKKRAAAKKAAKKAPASPSAKVALPEKFSPELATLV
DAPPPDPENWVFEVKFDGYRMLARIEDGAVRLITRNANDWTDKLLPLKAELERMKLPDGW
YDGEIVVHDEHGKPDFGKLQQAFDGKHAERIDFFLFDLPYFDGHDLRELPLVDRRGLLEK
LLAKKTSDKVRFSAEFGDKPDELVIAACKIGLEGVIGKRRDAPYVSRRSPDWIKLKCGLR
QEFVIGGFTDPKGSRTGIGSLLLGTYDEEGVLRYAGNVGSGFNHSSLTSIAQRLEKLRSD
ESPFPPRAVPGRKHHWVKPVLVAEVSFSEWTGAGAVRHPVFQGLREDKPAKGIKREKAQH
MTDATPNDDEDPVAASGKLPASMKITNGDRVIDRESGATKLDLIRYYALVGELMMAHLKG
RPVSLVRAPEGVGGELFFQKHADVRKMPGLRQLDQALDPDHPPMLEVAKVEGILSSAQWN
VVEIHTQNAFKGSYQKPNRMVFDLDPGQGVEWPAMQEAAQLMHAFLDELGLPAFLKTSGG
KGLHVVVPIKGGHDWDTVKAFSQAIVRHMADTLPDRFAFKSGPKNRVGKIFIDYLRNGQG
ATTVAAWSARVRPGLGISVPLRWEELPGLTSSTQWTVANVHTRLDEGNAPWEGYATAART
LTKAMKALGFEP
NT seq 2559 nt NT seq  +upstreamnt  +downstreamnt
atgcccgacgcactcaaagtctataaagccaagcgcaacttcacgatcacgtcagaaccg
gccgaagggggtacgcccggactcgatgccctgaccttcgtcatccagaagcactgggcc
agccgcctgcattacgatttccggctcgagctggatggcacgatgaaaagctgggcggtg
ccgaaaggccccagctacgacacccacgacaagcgcatggcggtgcacgtcgaggatcac
ccgatctcgtattccgatttcgaaggaaccattccagccaagcaatacggagcggggaaa
gtgatcatctgggacaagggtacctgggaaccgcttgaagacccgcacaagggttttgcc
aagggcagcatcaagttcgagatgcacgggcacaagatgcgcggccgctggaccctggtg
cgcatgaagggccgcggcaacgagaagcaggagccgtggctcctgatcaaggagaaggac
gaatacgcgcgctcgtccgaggagttctcgctggtcgacgagatgccggacagcgtcaag
gatctgccgatgcccgggcgcgtgcagcgcaaggtcgacgcgctgcgcgcagacgaggaa
gcggcgccggccccgaagaagcgggcggcggcgaagaaggccgcgaagaaagcgccggcg
tcgccatccgccaaggtcgccttgcccgagaaattttctcccgagctggccacgctggtg
gacgcgccgccgcccgacccggagaactgggtattcgaggtcaagttcgacggttaccgc
atgctggcgcgcatcgaggacggcgcggtacgcctgatcacgcgcaatgccaacgactgg
accgacaagctgttgccgctcaaggccgagctggagcgcatgaagctgcccgatggctgg
tacgacggcgagatcgtggtccacgacgagcacggcaagcccgatttcggcaagctgcag
caggccttcgacggcaagcatgccgagcgcatcgacttcttcctgttcgacttgccgtac
ttcgacggccacgatctgcgcgagctgccgctggtcgaccggcgcggcttgctcgaaaaa
ttgctcgcgaaaaagacgtcggacaaggtgcgcttctccgcggaattcggcgacaagccg
gacgaactcgtgatcgccgcctgcaagatcggcctggaaggcgtgatcggcaagcgccgc
gacgcgccctatgtgtcgcggcgctcgcccgactggatcaagctcaagtgcgggctgcgc
caggaattcgtgatcggcggcttcaccgatcccaaggggtcgcgcaccggcatcgggtcg
ctgctgcttggcacctacgacgaggaaggcgtgctgcgttacgcgggcaatgtcggctcg
ggcttcaaccattcctcgctgacctcgatcgcccagcgcctggaaaagctgcgcagcgac
gagagtcccttcccgccgcgcgccgtccccggccgcaagcaccactgggtcaagccggtg
ctggtggccgaagtcagcttctcggaatggacgggcgccggcgccgtgcgtcatccggta
ttccaggggctgcgcgaggacaagccggccaagggcatcaaacgtgaaaaggcacagcac
atgaccgatgcgactccaaatgacgatgaggatcccgttgcggcatccggcaagctaccg
gcatcgatgaagatcacgaatggcgaccgtgtgatcgacagggaaagcggcgcgaccaag
ctcgacctgatccgctactacgcgctggtcggcgaactgatgatggcgcacctgaagggc
cgtcctgtgtcgctggtgcgcgcacccgagggcgtgggcggcgagctgttcttccagaag
cacgccgacgtgcgcaagatgcctggcctgcgccagctggaccaggcgctcgaccccgac
catccgccgatgctcgaagtggcgaaggtggaaggcatcctgtcgtcggcgcagtggaac
gtggtcgagatccacacccagaacgcgttcaagggcagttaccagaagccgaaccgcatg
gtgttcgacctcgacccgggccagggcgtcgaatggccggcgatgcaggaggcggcccaa
ctgatgcacgccttcctcgacgaacttggcttgcctgcttttctcaagaccagcggtggc
aagggcctgcacgtggtggtgccgatcaagggcggccacgactgggataccgtcaaggcg
ttctcgcaggcgatcgtgcggcatatggccgataccttgcccgatcgcttcgccttcaag
agtggcccgaagaaccgggtcggcaagatcttcatcgactacctgcgcaacgggcagggc
gcgaccaccgtcgccgcctggtcggcgcgggtgaggcccggactcgggatctcggtgccg
ctgcgctgggaagagttgccgggcctgacatcgagcacgcagtggactgtggccaatgtg
cacacacggctggacgagggcaatgcgccgtgggagggttatgccacggcggccaggacg
ctcacgaaagcgatgaaggcgctcgggttcgagccctga

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