KEGG   Medicago truncatula (barrel medic): MTR_4g057345Help
Entry
MTR_4g057345      CDS       T01716                                 

Definition
(RefSeq) DNA ligase I, ATP-dependent protein
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
mtr  Medicago truncatula (barrel medic)
Pathway
mtr03030  DNA replication
mtr03410  Base excision repair
mtr03420  Nucleotide excision repair
mtr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mtr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    MTR_4g057345
   03410 Base excision repair
    MTR_4g057345
   03420 Nucleotide excision repair
    MTR_4g057345
   03430 Mismatch repair
    MTR_4g057345
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mtr03032]
    MTR_4g057345
   03400 DNA repair and recombination proteins [BR:mtr03400]
    MTR_4g057345
Enzymes [BR:mtr01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     MTR_4g057345
    6.5.1.6  DNA ligase (ATP or NAD+)
     MTR_4g057345
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     MTR_4g057345
DNA replication proteins [BR:mtr03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    MTR_4g057345
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     MTR_4g057345
DNA repair and recombination proteins [BR:mtr03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     MTR_4g057345
   NER (nucleotide excision repair)
    Other NER factors
     MTR_4g057345
   MMR (mismatch excision repair)
    Other MMR factors
     MTR_4g057345
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Motif
Other DBs
NCBI-GeneID: 25492370
NCBI-ProteinID: XP_013455924
UniProt: A0A072UVT2
LinkDB All DBs
Position
4
AA seq 777 aa AA seqDB search
MLALHFKSCFSLPFTTRISVKSSSSLFPFILSLPLSSIPRRAMSSKPPPSAFDKLMSGAR
AAAKKKPSPPSSSPKKRKSPTPPSPLKTPDTVQNPNNNLKTLETVQKPEETVHEEPPSKI
RNTSSSSKGIVAELKEKVPQLKKKPASFDPSSVVCWEKDKPVPFLFLCLAFDMINEESGR
IVITDIVCNLLRTVIHATPEDLVPVVYLSANRIAPAHEGLELGIGDASIIKALAEACGRT
EQQIKIQYKEKGDLGLVAKASRSSQSMMRKPDALTIRKVFKTFHLIAKESGKDSQEKKKN
HIKSLLVAATDCEPLYIIRLLQTKLRIGYAEQTLLTALGQAAVYTEEHSKPPPEIQSPFE
EAAKIVKKVYSVLPDYDKIVSALLKDGVWELPKKCDFTPGVPVGPMLSKATKGVSEILNK
FQDVEFTCEYKYDGERAQIHFLENGSVEIYSRNAERNTGKFPDVVTAVSRLKKTSVTSFI
LDCELVAYDRTKQRILPFQVLSTRARKNVALSDIKVDVCVFAFDLLYLNGQALLQENLKI
RREHLYTSFDEESGFFQFATSTTSNDVEEIQKFLDKAIDASCEGLIIKTLHEDATYEPSK
RSLNWLKLKKDYMENIGDSLDLVPIGAFHGRGKRTGVYGAFLLACYDNDNEEFQSICKIG
TGFKEEVLEERSTSLRSKVIPKPKAYYKCGESINPDVWFDASEVWEVKAADLTISPVYRA
AVGIVDSNKGISLRFPRLVRVRPDKAPEQASSSEQVAEMYNAQKHNHNDKQDDNEDD
NT seq 2334 nt NT seq  +upstreamnt  +downstreamnt
atgttggcattgcatttcaaatcgtgtttctctcttccgttcactactcgcatttccgtc
aaatcttcttcttcactcttccctttcattctctcactccctctctcctccattcctcgc
cgtgcaatgtcgtcaaaaccaccaccctccgccttcgacaaactcatgtccggcgcacgc
gccgccgccaagaaaaaaccctctccaccttcctcatctcctaagaaacgaaaatcccct
actcctccatcgccactcaaaaccccagataccgttcaaaaccctaataacaacctcaaa
accctagaaaccgttcaaaaacccgaagaaactgttcatgaagaaccgccgagcaagatc
cgaaacacatcatcatcttcgaagggaatagtcgctgaattgaaggaaaaggttccgcag
ctgaagaagaaaccggcgagtttcgatccgagttcggttgtttgctgggagaaagacaaa
cctgttccgtttttgtttctctgtttggcgtttgatatgattaacgaagagagtgggagg
attgtgatcactgacattgtgtgtaatttgttgagaactgtgatacatgctacaccggaa
gatcttgtgcctgttgtttatttatcagcgaatagaattgcgccggcgcatgaagggttg
gaattgggaattggtgatgcttcgattattaaggcgcttgccgaggcgtgtggaaggact
gagcaacagattaagattcagtataaggaaaaaggtgacttaggtttagttgcaaaagct
agccgttcttcccagtctatgatgcggaagcctgatgctttgactattaggaaggttttc
aaaacatttcatcttattgcaaaggaatctggaaaagacagtcaagagaagaaaaagaac
cacataaagtcacttcttgttgctgcaactgactgtgaacctctctatataatccgtttg
ctacagacaaaattgcgaattggatatgctgagcaaactctcttaactgccttaggccaa
gctgctgtgtacactgaagaacattctaaaccacctcctgaaattcagtctccttttgaa
gaggctgctaaaattgttaaaaaagtatattctgttcttcctgattatgacaagattgtg
tctgcactccttaaggatggtgtatgggaacttccaaagaagtgtgattttactcctggt
gttccagttgggcctatgctgtcaaaagcaaccaagggtgtatctgaaattctaaataag
tttcaggatgtagagtttacgtgtgaatacaaatacgatggagagcgtgctcagatacat
ttcttggagaatggctcggtagagatttacagtagaaatgctgaacggaacactgggaag
tttcctgatgttgttactgcagtttcaaggttaaagaaaacatctgtaacatcatttatc
cttgattgtgaacttgttgcatatgatcgtacaaaacagagaatccttcctttccaggtg
cttagtacccgtgcccgcaaaaatgtagctttgagtgacataaaggttgatgtttgtgtc
tttgcttttgatttgttgtaccttaatggccaagcacttcttcaggaaaacttgaaaatc
cgtagagagcatctctatacctctttcgacgaagaatctggattctttcagtttgcaaca
tcaacaacatcaaatgatgttgaggagattcagaaatttcttgacaaagccattgatgca
agctgtgagggattaattattaaaacattacatgaagacgccacatatgaaccctccaag
cggtcactcaactggctgaaactgaagaaagattatatggaaaatataggggactcacta
gatttggtacctattggtgctttccatggtcgtgggaaacgtacaggagtgtatggtgct
tttctccttgcttgctatgacaacgataatgaggagtttcaaagcatttgtaagatagga
actggattcaaagaagaagtgcttgaagaacgttctactagccttcgctctaaagtgatt
cccaaaccaaaggcatactataaatgtggagaatcaatcaatcctgatgtatggtttgac
gcaagtgaggtgtgggaggtgaaagctgcagacctgaccattagccccgtttaccgagct
gcagtgggcatagtagattccaataagggcatatctcttagatttccgcgtctagttcga
gtacggcctgacaaagcacccgagcaggcctcctcgtctgagcaggttgctgaaatgtat
aatgctcaaaaacacaatcacaatgacaaacaggatgacaatgaagacgattga

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