KEGG   Mucilaginibacter sp. HYN0043: HYN43_006135Help
Entry
HYN43_006135      CDS       T05668                                 

Gene name
ligD
Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
muh  Mucilaginibacter sp. HYN0043
Pathway
muh03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:muh00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    HYN43_006135 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:muh03400]
    HYN43_006135 (ligD)
Enzymes [BR:muh01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     HYN43_006135 (ligD)
DNA repair and recombination proteins [BR:muh03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     HYN43_006135 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID: AYL94902
LinkDB All DBs
Position
1529486..1532212
Genome map
AA seq 908 aa AA seqDB search
MSLEKYVEKRDFSKTKEPKAGRSKDKNHLMFVIQKHDASRLHYDFRLEMDGVLKSWAIPK
GPSTDPKTKRLAMMVEDHPFDYRNFEGIIPEGEYGGGTVIVWDEGTYEPIEAIKGKKAQE
KHLLKQLESGSLKIKLHGEKLEGEYALVKTHGMGENGWLLIKHNDEFASEKDITKKDKSV
LSGKTIQKMEKTSEKVWQHGHEEDVEKPAKSTNKKKEATEPVKKIAEKIDTDKPESFDVD
ALLKKAPKSKLPQNIKPMKATLVDEPFDDPDWLYEVKWDGYRAIAIIDDKGSAELVSRNN
LPFDKYYPINKLLKAWKINAVIDGEIVVLNDKGISDFGALQNWRSEADGNLVYYVFDILW
YDGKNLMDLPLEQRQAILKKILPQTHDQIRQSEAFKANGIEFFNAAERIGLEGIIAKKAN
SVYTSDLRSKEWLKIKVHRRQEVVVAGFTKNAGTSKAFSALVLGVYDDKGKLQYAGKVGT
GFSDKLQKEMMAQFKPLITDKSPFEVEPDVDKPSRFRPQRLGAKPTWLKPQLVAEVAFAE
VTGDGVFRQASFKGMRTDKKATDVVLETPKDTAETVTEADGKDVHTKTIKPVKDTDRKTL
LNPNDETQVRKICGHELKFTHLSKVYWPEDNVTKRDMFNYYYQVADYILPYLKDRPMSLN
RYPNGIHGSSFYQKDVKGKAPEWVTKTFPYTNGEGEHKEYLVGSDESYLLWMASLGCIEM
NPWFSRVQSPDNPDYCVIDLDPDKNTFDQVIEAALEVKKVLDAIDVPACCKTSGSTGMHI
YIPLAAKYDYDQSQMFARLIVNIVHKQIPDYTSLERMIANRKGKMYLDFLQNRPGATIAG
PYSLRPKPGATVSMPLHWDEVKPGLTMKDFTIFNSIDRLKETGDLFKDVLGKGINLEEVI
KKAKRVFE
NT seq 2727 nt NT seq  +upstreamnt  +downstreamnt
atgagcctggaaaagtatgtagagaagcgcgatttcagcaaaactaaagagcccaaagca
ggcaggagcaaggataaaaatcacctgatgtttgttatccaaaaacacgatgcctcaagg
ctacattacgatttcaggctggagatggatggcgtacttaaaagctgggctatccccaaa
ggcccctccaccgatcccaaaaccaagcgcctggccatgatggttgaggatcatcccttt
gattaccgcaactttgagggcattatacccgaaggggaatacggcggcggtactgtgata
gtttgggatgaaggcacttacgagcctatcgaggcaattaaaggaaaaaaggcacaggaa
aaacacctgctgaaacaacttgaatcaggctcgctcaaaataaaacttcacggcgaaaag
ctggagggagaatacgccctggttaaaacccacggcatgggcgaaaacggctggttgctg
ataaagcataacgacgagtttgcatctgaaaaagacatcaccaaaaaagataaatctgta
ctatcgggcaaaaccatccaaaaaatggaaaaaaccagcgaaaaggtttggcagcatggc
cacgaggaggatgtagaaaagccagcgaaatcaacaaataaaaaaaaagaagcaactgaa
ccggttaaaaaaatagctgaaaaaattgacacggataagccggaaagctttgatgttgac
gccttgctaaagaaggcacccaaatcaaaacttccccaaaatatcaaaccgatgaaggct
accctggttgatgaaccttttgacgacccggactggctttatgaagtgaaatgggatggt
taccgcgctattgccattattgatgataaaggcagtgccgaactcgtttcccgcaataac
ctcccttttgataaatattatcccatcaataaactactcaaagcctggaaaattaatgcg
gttattgacggcgagatcgtggtgttgaacgataagggcatatccgattttggtgccctg
caaaactggcgaagcgaggctgatggtaacctggtttactatgttttcgatatcctttgg
tacgacggaaaaaacctgatggacctaccgcttgaacaacgccaggctatcctgaaaaaa
atattaccccaaactcacgatcagattcgtcaaagcgaggcttttaaggccaacggtatc
gagtttttcaatgcggccgaaaggatagggctggagggcattatcgccaaaaaagccaat
agtgtttatacttctgatctgcgctcaaaagaatggcttaaaattaaggttcatcgccgg
caggaggtggttgttgccggctttactaaaaatgccggaacctcaaaggcttttagtgcg
ttggtattgggtgtttatgatgataaaggtaaactacagtatgccggcaaagtgggcaca
ggtttttcagataaactgcaaaaggaaatgatggcgcagtttaagccgcttattactgat
aaaagcccttttgaggttgagccggacgtagataagccatcgcgtttcaggccgcagcgc
ttaggggcgaagccaacctggcttaagccccaattggttgccgaagttgcatttgccgaa
gtaaccggcgatggggtattcaggcaggcttcgtttaaaggcatgcgaacagataaaaaa
gcaacagacgttgtgcttgaaaccccaaaagataccgccgaaactgtaacggaggccgat
ggaaaggatgttcacaccaaaactattaagcccgtgaaagataccgaccgcaaaacacta
ctcaaccccaacgacgaaacgcaggtacgcaaaatttgcgggcatgagctgaagtttacc
cacctgagtaaagtgtattggcccgaagataatgtaacgaagcgcgatatgtttaattac
tactaccaggtagccgattatattttgccttatctgaaagacaggcccatgtcgcttaat
cggtaccccaatggcattcatggttcaagcttttatcaaaaagatgtgaaaggtaaagcg
cccgaatgggttacaaaaacttttccgtataccaacggcgaaggcgaacataaggaatac
ctggttggttcggacgaatcatatctgctttggatggcatcgctgggttgcattgaaatg
aacccatggtttagccgcgtgcagtcgccggataacccggattattgcgtgatagacctc
gatccggataaaaacactttcgaccaggtgattgaggccgcactggaagtaaaaaaagta
ttggatgctatcgatgttccggcatgctgtaaaacatcgggttctaccgggatgcatatc
tatatcccattagcggctaagtatgattacgatcaatcgcaaatgtttgcaaggctgatt
gtgaatatcgtacataaacagatccctgattataccagcctggaacggatgatagctaac
agaaaaggtaaaatgtatctcgattttctgcagaaccgtccgggtgccactatcgccgga
ccatattcgctaaggccgaagccaggcgctaccgtctcgatgccgctgcactgggatgag
gtaaaaccgggccttaccatgaaggattttaccattttcaattctattgatcgccttaag
gaaacaggcgacttgtttaaagatgttttaggtaaagggattaacttggaggaggttatt
aagaaggcgaagagggtgtttgaataa

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