Pseudoduganella umbonata: FCL38_23750
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Entry
FCL38_23750 CDS
T06138
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
3.6.4.13
]
Organism
mum
Pseudoduganella umbonata
Pathway
mum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FCL38_23750
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mum03019
]
FCL38_23750
03009 Ribosome biogenesis [BR:
mum03009
]
FCL38_23750
Messenger RNA biogenesis [BR:
mum03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FCL38_23750
Ribosome biogenesis [BR:
mum03009
]
Prokaryotic type
rRNA helicases
FCL38_23750
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
DbpA
Helicase_C
ResIII
CMS1
AAA_19
Motif
Other DBs
NCBI-ProteinID:
QCP13123
LinkDB
All DBs
Position
5655595..5657835
Genome browser
AA seq
746 aa
AA seq
DB search
MTATPLLFSDLNLSAPLLKVLSEVGYEAPSPIQAQTIPHLMENRDVLGTAQTGTGKTAAF
ALPILSRLDIRQNTPQALVLAPTRELAIQVAEAFQRYAAHIPNFHVLPIYGGQSYGPQLS
ALRRGVHVVVGTPGRVIDHLDKGSLDLSKLKTLVLDEADEMLRMGFIDDVERILKETPGS
RQTALFSATMPSPIRRIANTYLREPAEITVAAKTTTSENITQRYWLVSGMHKLDALTRIL
EAEPFDGMIIFNRTKLGTEELAERLCARGFSAAAINGDMQQAARERTIGMLKEGKIDILV
ATDVAARGLDVERISHVVNYDVPYDAESYTHRIGRTGRAGRTGDAILFITPRERTLLKTI
ERATRQPIKPMELPTLQAVNDVRIAKFKDQITETLAAGGLEQFQALIGDYEREHDVPATE
IAAALAMMARGNTPLLLDKKAEKGWHEDGRPAAPQREERSPRGDRGDRGDRFERPERAER
AERPAYPKKERIAREPEPGMATYRIEVGYEDGVKPGNIVGAIANEGGVDSKFIGRIEIFE
DYTVLDMPADLPADVLDTLTQVRVAGRPMRIRRDGEPAAAPAQAAAPAAKPAPKAKVERE
ERPVASKAPREERPAAPKGLDAVVADAVTEEEAPKKKKRERAQDGLAMRAYRIEVGSMHE
ATPSNIVGAIANESGLEARYIGRIEIFEDHTVLEMPDGMPDEIFKHLGKVWVGGQQLKIS
KADAMPPLSGKHTPPKKPAAKPKAKR
NT seq
2241 nt
NT seq
+upstream
nt +downstream
nt
atgactgctacaccccttctgttttccgacctgaacctgtccgctccgctgctgaaagtc
ttgagcgaagtaggctatgaggcgccttcgccgatccaggcgcagacgattccccacctg
atggagaaccgcgacgtgctgggcacggcgcaaaccggcaccggcaagaccgccgccttc
gcgctgccgatcctgtcgcggctggacatccgccagaacacgccgcaggcactggtgctg
gcacccacgcgcgaactggcgatccaggttgccgaagcgttccagcgctatgccgcgcat
atcccgaacttccacgtgctgccgatctatggcgggcaaagctacggcccgcagctgtcc
gcgctgcgccgcggcgtgcacgtcgtcgtcggcacgccgggacgcgtgatcgatcacctg
gacaagggctcgctcgacctgtcgaagctgaaaacgctggtgctcgacgaggccgacgag
atgctgcgcatgggctttatcgacgatgtcgagcgcatcctgaaggaaacgccggggtcg
cgccagaccgcgctgttctcggccacgatgccgtcgccgatccgccgcatcgccaacacc
tacctgcgcgaaccggccgaaatcacggtggcggcgaagaccaccacctccgagaacatc
acccagcgctactggctcgtctccggcatgcacaagctcgatgcgctgacccgcatcctg
gaagcggagccgttcgacggcatgatcatcttcaaccgcaccaagctgggcaccgaggaa
ctggccgagcgcctgtgcgcccgcggcttctcggcggccgcgatcaacggcgacatgcag
caggccgcgcgcgaacgcaccatcggcatgctcaaggaaggcaagatcgacatcctggtg
gcgaccgacgtggccgcgcgcgggctggacgtggaacgcatcagccatgtcgtcaactac
gacgtgccgtacgatgccgaaagctacacgcaccgcatcggccgcaccggccgtgccggc
cgcaccggcgacgcgatcctgttcatcacgccgcgtgaacgcacgctgctgaagacgatc
gagcgcgccacgcgccagccgatcaagccgatggagctgccgaccctgcaggccgtgaac
gacgtgcgcatcgccaagttcaaggaccagatcacggaaacgctggccgccggcggcctg
gaacagttccaggcgctgatcggcgattacgagcgcgaacacgatgtgccggccaccgaa
atcgccgccgcgctggccatgatggcgcgcgggaatacgccgctgctgctcgacaagaag
gccgagaagggctggcacgaggatggccgcccggccgccccgcagcgcgaggagcgcagc
ccgcgtggtgatcgcggcgaccgcggcgaccgcttcgagcggccagagcgcgccgagcgc
gcggagcgcccggcttatccgaaaaaggaacgcatcgcccgcgaaccggaacccggcatg
gccacgtaccggatcgaagtgggttacgaggatggcgtcaagccgggcaacatcgtgggc
gcgatcgccaacgagggtggcgtcgactcgaagttcatcggccgcatcgagatcttcgag
gattacacggtgctcgacatgccggccgacctgccggccgacgtgctcgatacgctgacc
caggtacgggtcgcgggccggccgatgcgcatccgccgcgatggcgaacctgctgcggca
ccggcccaggctgccgccccggcagcgaaacccgcgccaaaagcgaaagtggagcgcgag
gagcgtccggtcgcatcgaaagccccgcgcgaggaacggccagccgcaccgaaaggcctc
gatgccgtggtggccgacgcggttaccgaggaagaagcgccgaagaaaaagaagcgcgag
cgggcgcaggatggcctggccatgcgtgcctaccggatcgaagtgggcagcatgcacgaa
gccacgccgtcgaacatcgtcggcgcgatcgccaatgaaagcggcctggaagcgcgttac
atcggccgcatcgagatcttcgaggaccacaccgtgctggaaatgccggacgggatgccg
gacgagatcttcaagcacctcggcaaggtgtgggttggcggccagcagctgaagatcagc
aaggccgatgcgatgccgccgctgtccggcaagcatacgccgccgaagaagccggccgcc
aagcccaaggcgaaacgctga
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