KEGG   Musa acuminata (wild Malaysian banana): 103980411Help
Entry
103980411         CDS       T03447                                 

Definition
(RefSeq) DNA ligase 6 isoform X1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
mus  Musa acuminata (wild Malaysian banana)
Pathway
mus03030  DNA replication
mus03410  Base excision repair
mus03420  Nucleotide excision repair
mus03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mus00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    103980411
   03410 Base excision repair
    103980411
   03420 Nucleotide excision repair
    103980411
   03430 Mismatch repair
    103980411
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mus03032]
    103980411
   03400 DNA repair and recombination proteins [BR:mus03400]
    103980411
Enzymes [BR:mus01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     103980411
    6.5.1.6  DNA ligase (ATP or NAD+)
     103980411
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     103980411
DNA replication proteins [BR:mus03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    103980411
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     103980411
DNA repair and recombination proteins [BR:mus03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     103980411
   NER (nucleotide excision repair)
    Other NER factors
     103980411
   MMR (mismatch excision repair)
    Other MMR factors
     103980411
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C DRMBL UBA_4 RMMBL Lactamase_B_2
Motif
Other DBs
NCBI-GeneID: 103980411
NCBI-ProteinID: XP_009395089
LinkDB All DBs
Position
4
AA seq 1389 aa AA seqDB search
MATPPPPFSTSSLFLSSYRSFSAALPSPPPSPPLAFRLLSDGSQLPPVPSDFPLSKLIPR
TRFVVDGFRSAGDFSVSYLLTHFHSDHYAGLGSAWCKGLIFCSATTARLLVEILNVSPFF
VVSLSLGEFTEIDEWEVAAVDANHCPGAVQFLFRTRVCEGQRPERFIHTGDFRFHEQMTL
DPVLCDFVGADAVFLDTTYCNPKFVFPSQEESVEYIVNTVKRFKEQNEGSGESVLFLIAT
YVIGKEKILLEISRRCGCLLQVDNRKMQVLSVLGFAGSGVFTEDASASDIHVIGWNVLGE
TWPYFRPNFVKMKEIMVERGYNKAVGFISTGWLNETKRDGFAVRVKDLLEIHLVPYSEHS
NYNELREYVRFLRPKRVIPTVGMDVEKLDSKHALAMRKHFAGLVDETANKHDFLMAFHRK
SEGADTSAGNDMTGNRNQQEDVDMVDNPTATSIRSCQQSDSQDLHMVNDEEMEGVVEDLQ
DCLPSWVKQDQVLDLLKRSNGDLVSAVSEFFEHETEFYKQANAGNISIASSCKSINTDLE
PLLPLKSVGEAPESGRKNFLDQVKQSTNQNLRLLTPSLAKKRGLGGGNKKKKKAKGCSNL
ESSGGKQSTITNFFRRVASGASSSDTCAVTSNQQITIETYKEELDQFLQIINNGMPRKSA
ALLLEKVRGNIDVAVDMYYSGSSNILENEGNLLSEVVVSGVLVNKCTKKVSNSSEDKISL
PTLYLQGSSREDKTPANVSLPIEKYSPIEHACWKAGEPAPYLHLALTFDLVEQVRGKIKT
TSMLSNMFRSLLALSPGDVLPALYLCTNKIAADHENMELNVGGSLVVTALEEACGMNRSR
IKEMYNTLGDLGDVAQEIRQTQSLLAAPRTLSIHHLFCMLREISMITGTGSAVRRKNLIV
NLMRSCREMEIKFLVRTLVRNLRIGAMMKTILPALAQAVVLNSHSPLQCVGISETTRLQL
QGISAAVAEAYNVLPNLDLLIPSLLSKGIDFSAASLQMTPGTPIPPMLARITNGAMQVLK
LFEGRAFTCEYKYDGQRAQIHRAADGSIRVFSRQMKETTSRFPDLIDTIKESCKHEVSTF
ILDAEVVAVDRKNGGKLMSFQELSSRERGNKDSSIKIDNIRVDICVFIFDIMFCNGERLL
DFPLRQRRKYVKDLFYKEKMGYLEFAKEITVEADEACLNNQNTLSRINLFFKDACKSSCE
GIMVKTLDIDAGYSASKRSEAWLKVKRDYIEGLGDSFDLVPIGAWYGNGRKAGWYSPFLM
ACYNSDTEEYQSICRVMSGFSDSFYLEMKEFFSGERLLLKKPSYYRTDESPDLWFPPELV
WEIRGADLTISPVHHAAVGLVHPSRGISVRLPRYIRSLSDRKSEDCSTAADIACMYKAQT
RKMEVFKED
NT seq 4170 nt NT seq  +upstreamnt  +downstreamnt
atggccactccccctcctcctttctccacatcctccctcttcctctcctcctaccgctcc
ttttccgccgccctcccttcccctccaccctcccctcccctcgccttccgcctcctctcc
gatggctcccagctccctccggtcccctctgacttcccgctctcgaagctaatcccccgg
acccgtttcgtcgtcgacggcttccgctccgccggtgacttctccgtctcctacttgctc
acccacttccactccgaccactacgcgggcctcggcagtgcctggtgcaaaggccttatc
ttttgctccgccaccaccgctcgcctcctcgtcgagatcctcaatgtgtcgcctttcttc
gtcgtctccctgtccttaggcgagttcacggagatcgacgaatgggaggtggccgccgtc
gacgccaatcactgccccggcgctgtccagttccttttcaggacccgtgtctgcgaaggg
cagcgaccggagaggtttatccacacaggtgatttccgtttccatgaacagatgacattg
gaccctgttttatgcgattttgttggcgcggatgctgttttccttgacacaacgtattgc
aaccccaaatttgtcttcccctcacaagaggagtcagtggaatacattgtcaacacagtc
aaaagatttaaggaacaaaatgagggatcaggtgaatcggttctcttcttgatcgcaact
tatgtcatcgggaaagagaagattttgcttgagatttctcgtcggtgtggttgcctactg
caagtggataacaggaagatgcaggttttgtctgttctggggtttgctggttcaggcgtt
tttacggaggatgcttcagccagtgacatccacgtgattggttggaatgtgttgggtgag
acttggccttatttcaggcctaattttgtgaagatgaaggagatcatggttgagagagga
tacaacaaggcggtgggtttcatttcaacagggtggctgaacgagacaaagagggatgga
tttgcagtgagggttaaagatctactcgagattcatctagttccatacagcgaacattca
aactataatgaattaagagaatacgtgaggttcttgaggccaaaacgggtcatcccaact
gtgggaatggatgttgaaaagctagacagcaagcatgctttagccatgaggaagcatttt
gcagggctggttgatgagacagcaaacaagcatgattttctaatggctttccatcggaag
tcagagggtgctgatacaagtgctgggaatgacatgacaggtaacagaaaccagcaagag
gatgtggacatggtggacaatccaactgcaacatcaataaggtcatgccagcaatctgat
tcacaggatctgcatatggtgaatgatgaagaaatggaaggagtagttgaggaccttcaa
gattgcttgccgtcttgggtgaaacaggatcaagttttagatctgctgaaaaggtcaaat
ggggatcttgttagtgcagtttcagaattttttgagcatgaaacagaattctataagcaa
gcaaatgctggtaacatttctattgctagctcttgtaaaagcattaacactgacctcgag
ccgttgcttcctttgaagtctgtcggcgaagcccctgaatctggtagaaagaatttcctt
gatcaagtgaaacagtcaaccaaccaaaatttacgcctgcttactccatctctggccaaa
aaaaggggtttaggtggtggaaacaagaaaaaaaagaaagcaaaaggttgctcaaatcta
gaatcaagtggaggcaaacaatctaccatcacaaattttttcagaagagttgcatcgggt
gcttcttccagtgatacttgtgctgttacttctaatcagcagattactattgaaacatat
aaagaagagttggatcagtttctccagatcataaataatggcatgccaagaaaatctgct
gccttattgctggagaaggttagaggaaatattgacgtagcagttgatatgtattatagt
ggttccagtaatatattagagaatgaggggaatttactctcggaagttgttgtctcaggt
gttcttgtaaataagtgtaccaaaaaggtaagcaattcttctgaagacaaaataagcttg
ccaacattgtatctacagggaagttcaagagaagacaaaactccagctaatgtatcatta
cctattgaaaaatattctccaattgagcatgcatgctggaaagctggagaacctgctccc
tacttgcacctggcactgacttttgatttagtggaacaagtaagaggcaagataaagacc
acatctatgctgagtaatatgttcagaagcttgcttgctttgtctcctggtgatgtgctg
cctgctttatatctgtgcacaaacaagattgctgctgaccatgaaaacatggaactgaat
gttggtggaagtttggttgtaactgcactggaagaggcttgtggcatgaacaggtccaga
atcaaagaaatgtacaacacattaggtgatcttggtgatgtagcacaagaaatccggcaa
actcagtctttacttgctgctcctcgtacactttcaattcatcatttattttgtatgctt
cgagagatcagtatgatcacaggtactggaagtgctgtccggaggaaaaaccttattgta
aatctcatgcgttcctgtagagaaatggaaataaaatttcttgtcagaaccttggttcgt
aatctgcgtattggagccatgatgaagaccattttgccagcactagcacaagcagtggtt
ctgaacagtcactcccccttacaatgtgtgggaatttctgagaccactagattgcagctt
cagggtatttctgcagcagttgctgaggcatacaatgtgcttccgaatttggatttgctt
attccttctcttttgagcaaaggcatagatttttctgcagcttcactgcaaatgacacct
ggcacacctattccacctatgcttgccagaattaccaatggtgctatgcaagtgctgaaa
ttgtttgagggtagagctttcacctgtgaatataaatatgatggtcaaagggctcaaatt
cacagagcagctgatggatctatacgagttttttcccgacaaatgaaggaaacaacttct
agattcccggatttaatagatacaattaaagaatcatgtaaacatgaagtttctactttt
atattggatgcagaggttgttgctgtggatagaaagaatggtgggaaactcatgtctttt
caagaactatcttcacgggagagaggaaataaagattcctcgataaaaattgataacatc
agagttgatatttgcgtgttcatctttgatatcatgttttgcaatggagaacggttgttg
gattttccacttcgtcaaaggaggaagtatgtgaaggatttgttttataaggaaaagatg
ggttacttggagtttgctaaggaaataactgtggaagcagatgaagcatgtctgaataat
caaaacacattgtctagaataaacttatttttcaaagatgcatgtaaatcttcttgtgaa
ggaataatggtgaagactttggatattgatgctggatattctgcatcaaaacgtagtgag
gcatggttaaaggtaaaacgtgattatattgaaggattaggtgacagttttgatcttgtt
cctattggtgcttggtatggaaatggtagaaaagctggatggtacagtcctttccttatg
gcatgctacaattctgatactgaagaatatcaaagtatctgccgtgttatgtctggtttt
tctgattccttctatttagagatgaaggaattcttttctggcgaaagattattgctcaag
aagccatcttactatcgaacagacgagtcacctgatctatggtttccccctgagcttgtg
tgggaaatacgaggcgcagacctcacaatctcaccagttcaccatgctgctgttggctta
gtccacccttctcgaggtatctcagtgagacttccaagatacatacgttctttgtcggac
aggaaatccgaagactgcagcactgcagctgatatcgcctgcatgtacaaggctcaaaca
agaaagatggaggtgttcaaggaagattag

DBGET integrated database retrieval system