KEGG   Methanosarcina vacuolata: MSVAZ_2465Help
Entry
MSVAZ_2465        CDS       T03815                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
mvc  Methanosarcina vacuolata
Pathway
mvc03030  DNA replication
mvc03410  Base excision repair
mvc03420  Nucleotide excision repair
mvc03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mvc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    MSVAZ_2465
   03410 Base excision repair
    MSVAZ_2465
   03420 Nucleotide excision repair
    MSVAZ_2465
   03430 Mismatch repair
    MSVAZ_2465
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mvc03032]
    MSVAZ_2465
   03400 DNA repair and recombination proteins [BR:mvc03400]
    MSVAZ_2465
Enzymes [BR:mvc01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     MSVAZ_2465
    6.5.1.6  DNA ligase (ATP or NAD+)
     MSVAZ_2465
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     MSVAZ_2465
DNA replication proteins [BR:mvc03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    MSVAZ_2465
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     MSVAZ_2465
DNA repair and recombination proteins [BR:mvc03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     MSVAZ_2465
   NER (nucleotide excision repair)
    Other NER factors
     MSVAZ_2465
   MMR (mismatch exicision repair)
    Other MMR factors
     MSVAZ_2465
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID: AKB44734
UniProt: A0A0E3Q7D0
LinkDB All DBs
Position
complement(3171537..3173243)
Genome map
AA seq 568 aa AA seqDB search
MTSFREFAETCQAIEKISSTIDTTSRVADLLKMVDVEELPIATHFIMSEVFPAWSGEQLG
IGTSLLYVSLSKASGMPVKSIESLIRTTGDIGDTALLILKEKRKNQVTFSSFFEEQPELS
ITEVYNRFKIASEASGKGSQDIKIKNLQFLFNSSTPREAKYISRLALEELRIGVGEGVVR
DAIAKAFSVPAGVVEHAFMVTNDLGIVAATAKEGGVESLEHLGIEINRPIKMMLSQISPD
IIDDIKEMKEAAIEWKFDGARIQVHKDGNSVTLFSRKLENVTNSLPDLVDIVRKHVKAES
AILDGEAVAVDENGKPRAFQEILKRFRRKYDVEEKALGIPIQLNLFDIMYLNGKTLIDLP
LIERRKALESCVESSVEDSKSICVDKQVITGDLELIEKIYKEALDAGHEGVMVKNPNSFY
SPGKRGKNWLKKKPLMETLDLVIVGAEWGFGRRANLIGSYTLACYDPETLHYLQIGKVGT
GLTDDQLKELTEILSGLMEGGEAGGVFAIRPKVVLEIAFEEIQKSPNYDSGFALRFPRFI
RIRDDKDPEEADTIQRIGKVYSQQLKRL
NT seq 1707 nt NT seq  +upstreamnt  +downstreamnt
atgacaagtttcagggaatttgcagaaacctgccaggcgattgaaaaaatctcgagtaca
attgatactacaagtagggttgctgaccttcttaaaatggttgatgttgaagagttgccc
attgcaactcattttattatgagtgaggtttttcctgcctggagtggagaacaattggga
attggcacgagcctgctgtatgtttccttatccaaagcttccggaatgccagtaaaaagt
atagaatctcttattcggactaccggggatataggggacacagcccttcttatcctcaag
gagaaaaggaaaaatcaggttactttttcctctttcttcgaagaacagcccgagctctca
ataaccgaagtttataaccgttttaaaattgcctctgaagcctcaggaaaaggctcacag
gacattaagataaagaaccttcagtttctcttcaattcctcgaccccaagggaagcaaag
tatatttccaggcttgcgcttgaggaactccgcataggcgtcggagaaggcgttgtaaga
gatgcaattgcaaaagctttttccgtgcctgcgggtgttgttgagcacgcctttatggtt
acgaacgacctggggatagttgctgcaactgccaaggaaggcggggtggaatcccttgaa
cacctgggaattgaaatcaatcgcccgattaagatgatgctctcgcagatcagccctgac
ataattgacgatatcaaagaaatgaaggaggctgcgattgaatggaaattcgatggggca
agaatccaggtccataaggatggaaattcagttacgcttttctcacgaaagcttgaaaat
gttacaaattctctccctgaccttgtggatatcgtgcgcaagcatgtaaaagccgaatct
gccatccttgacggagaagccgtcgcagtggacgagaatggtaagcccagggcatttcag
gagatccttaaacgcttccggcgcaagtacgatgtggaagaaaaagcccttggcatccct
attcagctcaacctttttgacataatgtacttaaacggaaaaacgctgatagacctgcct
cttattgagcggcgaaaagcgcttgagtcctgcgtggaaagctcggttgaggattcaaaa
tccatttgcgtggacaaacaggtaataacaggagaccttgagcttatagagaaaatctat
aaggaagccttagatgctggacatgagggagttatggtcaaaaacccaaattcgttttat
tctcctggtaagcgcggcaaaaactggcttaagaaaaagcctcttatggaaactcttgac
cttgtaatcgtaggcgccgaatggggctttggaaggcgcgcaaatctcataggctcttac
acacttgcctgttatgacccagaaactctgcattatcttcagatcgggaaagtaggcacg
ggcctgaccgatgaccagctaaaggagctcacagagatactttccgggcttatggaaggt
ggagaggcaggtggtgtatttgcaatccggccaaaagtagtcctggaaatcgcttttgag
gaaatccagaaaagccccaattatgattccggttttgcgcttcgttttccgcgctttatc
cgcatccgggacgacaaagaccccgaagaagccgatacgatacagagaattggaaaggta
tatagccagcagttgaaaaggttgtaa

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