KEGG   Mannheimia varigena USDA-ARS-USMARC-1312: X874_8800
Entry
X874_8800         CDS       T03028                                 
Name
(GenBank) Cold-shock DEAD box protein-A
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:3.6.4.13]
Organism
mvg  Mannheimia varigena USDA-ARS-USMARC-1312
Pathway
mvg03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mvg00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    X874_8800
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mvg03019]
    X874_8800
   03009 Ribosome biogenesis [BR:mvg03009]
    X874_8800
Enzymes [BR:mvg01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.4  Acting on acid anhydrides to facilitate cellular and subcellular movement
    3.6.4.13  RNA helicase
     X874_8800
Messenger RNA biogenesis [BR:mvg03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     X874_8800
Ribosome biogenesis [BR:mvg03009]
 Prokaryotic type
  rRNA helicases
   X874_8800
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1 DRTGG tRNA-synt_1b
Other DBs
NCBI-ProteinID: AHG77516
LinkDB
Position
complement(935225..937054)
AA seq 609 aa
MTTESLTFADLGLPQSILDAVTDMGFVNPSPIQQECIPHLLAGRDVLGMAQTGSGKTAAF
SLPLLAQIDPAQRHPHMLVMAPTRELAIQVADACEQFAKNMKGIRVVTVYGGQRYDIQLR
ALKQGSQVVVGTPGRILDHIRRGTLDLSELKCIVLDEADEMLRMGFIDDVETVMAELPED
HQTALFSATMPEPIRRITRRFMKDPQEVKIKATERSAPDIEQSYWLVNGFRKNDALLRFL
EVEEFDAAIIFTRTKTGTIDITELCERNGYRTAALNGDMTQQAREQTLEKLRSGRLDILV
ATDVAARGIDIERISLVINYDIPLEEESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI
ENLIKKPIVEVSIPNHEVLMEKRREKFKARISKQLEHHDLEKYRELLEDLFTADQDHEEL
AAAMMMLLQEKQKLILPPDPVVRAARSERGRDRNDRNGDRNDRRNGREYRDNNGVAMDLY
RIELGREDGVEVRHIVGAIANEGDISSRYIGHIKLHDTYSTIELPQGMPNHLVQHFAQKA
RVLNKQMQMSLLGPVNGGNDQPFESRGRRGGERRNDRNERGGRRDGGFGKDRKGGFKEKR
FGEKRGRRD
NT seq 1830 nt   +upstreamnt  +downstreamnt
atgacaactgaatctttaactttcgccgacttaggtcttcctcaatcaatccttgatgcc
gtaaccgatatgggctttgtaaacccatcgcctattcaacaagagtgtattccgcattta
ttagccggtcgtgatgtgttaggtatggcacaaaccggtagcggaaaaacagcagctttc
tctttgccgttactcgctcaaatcgacccggctcaacgccacccgcacatgttggtaatg
gctccaacccgtgaattagccatccaagtggcagacgcttgcgaacaattcgccaaaaat
atgaaaggcattcgtgtggttactgtttacggtggtcagcgttacgacatccaacttcgt
gccttaaaacaaggctcgcaagtagttgtgggtacaccaggccgtattcttgaccacatt
cgtcgtggcactttagatttatccgagcttaaatgtatcgtattagacgaagctgatgaa
atgttgcgtatgggctttattgatgatgtggaaaccgtaatggcagaattgccggaagat
caccaaacggctctcttctctgcgacaatgccggagccgattcgccgcattacccgccgc
tttatgaaagatccgcaagaggtgaaaatcaaggcgactgaacgctctgccccagatatc
gagcaaagctactggttagtaaacggcttccgtaaaaatgacgcgttattacgtttctta
gaagtggaagagttcgatgcggctatcatctttacccgcaccaaaaccggcaccattgat
attaccgaattgtgcgaacgtaacggctaccgcacggcagccctcaacggcgatatgacc
caacaagctcgcgagcaaactttagaaaaattacgctcaggtcgtttagatattttagtg
gcaacagacgtagctgctcgtggtatcgacatcgaacgtatcagcctagtaattaactat
gacattccgcttgaagaagaatcttacgttcaccgtatcggtcgtaccggtcgtgccggt
cgttcaggtcgtgcattattattcgttgagcctcgtgaacgccgcttactgcgtaatatt
gaaaacctcatcaaaaaaccgattgttgaagtttcaattccaaaccatgaagtgttaatg
gaaaaacgccgtgagaaattcaaagctcgtatttctaaacagttagagcatcacgattta
gagaaataccgtgagttgttggaagatttattcactgcagatcaagatcacgaagagtta
gcggcagcaatgatgatgttattgcaagagaaacaaaaattgattcttccgccagatccg
gttgtgcgtgcggcacgttcagagcgtggtcgtgatcgcaatgacagaaacggtgacaga
aatgaccgtcgcaatggtcgtgagtatcgtgataacaacggtgtggcgatggatttatac
cgtatcgaacttggtcgtgaagatggtgtggaagtgcgtcatatcgtgggtgcaatcgct
aacgaaggcgacatcagcagccgctatatcgggcatatcaaattgcacgacacttactcc
actatcgaattaccacaaggtatgccgaaccacttagtacaacacttcgctcaaaaagcc
cgtgtgttgaacaagcagatgcaaatgtcgttattagggccggtaaatggcggaaacgac
caaccgtttgaatctcgtggtcgccgtggtggtgaacgccgtaatgacagaaacgagcgt
ggtggacgccgtgatggcggtttcggtaaagatcgcaaaggcggttttaaagaaaaacgc
tttggtgaaaaacgtggtcgccgtgactaa

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