KEGG   Mycolicibacterium vaccae: MYVA_4735Help
Entry
MYVA_4735         CDS       T04356                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
mvq  Mycolicibacterium vaccae
Pathway
mvq03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:mvq00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    MYVA_4735
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mvq03400]
    MYVA_4735
Enzymes [BR:mvq01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     MYVA_4735
DNA repair and recombination proteins [BR:mvq03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     MYVA_4735
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: ANI41808
LinkDB All DBs
Position
complement(4931281..4933560)
Genome map
AA seq 759 aa AA seqDB search
MVDRYDRVKLTNPDKVLYPATGTTKGEVFDYYVNVAAAMLPHIAGRAVTRKRWPNGVEAE
AFFEKQLASSAPDWLDRATIVHKSGTTTYPVIDTVEGLAWIAQQAALEVHVPQWRFTDEG
KVGPATRIVFDLDPGEGVTFRQLCEVAHEVRDLITDIGLRTFPLTSGSKGVHLYVPLDEP
ISSRGASVLAKRVAQQLEQTMPKQVTATMTKSLRAGKVFVDWSQNNGNKTTIAPYSLRGR
EHPTVAAPRTWEEIEDPDLKHLTFDEVLDRLDRDGDLLADLDPPVPVPDRLTRYRSMRDT
AKTPEPVPADAPRTGNNDKFVIQEHHARRLHYDFRLERDGVLVSWAVPKNLPESPSQNHL
AVHTEDHPMEYLTFAGEIPKGEYGGGEVYVWDTGTYETEKFRDHAPDGPAKGGEVIVTLH
GEKIEGRYALIQTDGKNWLAHRMKDQNKPTPADLAPMLATEGSVERMTKGQWAFEGKWDG
YRLLVDADRGKLTLRSRRGRDVTGEYPQLQALAADLADHHVILDGEAVALDESGVPDFGQ
MQNRARSTRVEFWAFDILFLDGRSLLKAKYSDRRRLLEALAEGGGLIVPAAINADTGPEA
LEAARKKRWEGVIAKKRDSAYQPGRRSSAWIKDKIWNTQEVVIGGWRQGEGGRTSGIGAL
MLGIPDDDGLQFVGRVGTGFTEKELAALKKTLTPLQADESPFAARLPTQDAKGVTFVRPE
LVGEVRYSERTSDNRLRQASWRGLRDDKTPDEVGWESPR
NT seq 2280 nt NT seq  +upstreamnt  +downstreamnt
gtggtggaccgctatgaccgggtgaagctgaccaacccggacaaggtgctgtatccggcg
accggcacgaccaaaggtgaagtcttcgactattacgtcaacgtcgcggcggcgatgctg
ccgcacatcgccggccgggctgtcacacgcaagcggtggcccaacggcgtcgaggcggag
gcgttcttcgagaagcagctcgcctcgtccgcgcccgactggctggaccgcgcgaccatc
gtgcacaagtccggcaccaccacctaccccgtgatcgacaccgtcgaggggctggcctgg
atcgcgcagcaggcagcgctggaagtgcacgtcccgcagtggcggttcacggacgagggg
aaggtcggtccggccacccgcatcgtgttcgacctcgaccccggcgaaggggtgacgttc
cgtcagctgtgcgaggtcgcacacgaggttcgggatctgatcaccgacatcgggctgcgg
accttcccgttgaccagcggcagcaagggtgtgcacctgtatgtcccgctggacgagccg
atcagctcgcggggcgcatcggtgctggccaagcgtgtcgcccagcagcttgagcagacg
atgcccaagcaggtcaccgcgacgatgacgaaaagtctgagggccggcaaggtgttcgtg
gactggagccagaacaacggcaacaagaccaccatcgcgccgtactcgcttcggggccgc
gaacacccgaccgtcgcggcgccgcggacctgggaggagatcgaagatcccgacctcaag
cacctcacgttcgacgaggtgctcgaccggctcgaccgggacggtgatctgctcgccgac
ctcgacccgcccgtcccggtgcccgaccggctcacccgctaccgcagcatgcgcgacacc
gccaagaccccggagccggtccccgccgacgcgcccaggaccggcaacaacgacaagttc
gtcatccaggaacaccacgcgcgccggctgcactacgacttccgtctcgaacgcgacggg
gtgctggtcagctgggcggtgccgaagaacctgcccgaatcgccgtcgcagaatcacctc
gccgtgcacaccgaggaccatccgatggagtacctgaccttcgccggcgagatccccaag
ggggagtacggcggtggcgaggtctatgtctgggacaccggcacctacgagaccgagaag
ttcagggaccacgcgcccgacggcccggccaagggcggcgaggtgatcgtcacgctacac
ggcgagaagatcgagggccgctacgcgctgatccagaccgacggcaagaactggctggcc
caccggatgaaagaccagaacaagccgaccccggcggatctggcgccgatgctggccacc
gaggggtcggtcgagcggatgaccaagggacagtgggccttcgagggaaagtgggacggc
taccgcttgctcgtcgacgcggaccggggcaagctcacgctgcggtcgcggcgtggacgc
gacgtcaccggcgagtacccgcagctgcaggcgctggcagccgatctcgccgaccatcac
gtgatcctggacggcgaggcggtggcgctcgacgagtccggcgtacccgacttcggtcag
atgcagaaccgggcgcgttcgacccgggtggagttctgggcgttcgacatcctcttcctc
gacggccgctcactgttgaaggccaagtactccgaccgtcggcggctgctggaggcgctg
gccgagggcggcggactgatcgtgcccgcggcgatcaacgccgacaccggacccgaagca
ctcgaggcggcgcgaaagaagcggtgggagggcgtcatcgcgaagaagagggactcggcc
taccaacccgggcggcgttcgtcggcgtggatcaaggacaagatctggaacacccaggaa
gtcgtgatcggcggctggcgacagggggagggcggacgcaccagcggcatcggcgcgctg
atgctcgggatccccgacgacgacggcctgcagttcgtcggccgggtcggcaccgggttc
accgagaaggaactggccgcgttgaagaagacgctgacacccctgcaggccgacgaatca
cccttcgcggcaaggcttccgactcaggacgccaaaggggtcacgttcgtgcgccccgaa
ctggtcggggaagtccgctacagcgagcgcacatcggacaaccggctgcggcaggcgagt
tggcgtgggctgcgcgacgacaagacccccgacgaggtcgggtgggaatctccgcggtag

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