KEGG   Mycobacteroides abscessus 4529: NF90_18290Help
Entry
NF90_18290        CDS       T03535                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
myc  Mycobacteroides abscessus 4529
Pathway
myc03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:myc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    NF90_18290
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:myc03400]
    NF90_18290
Enzymes [BR:myc01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     NF90_18290
DNA repair and recombination proteins [BR:myc03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     NF90_18290
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: AIV21837
LinkDB All DBs
Position
complement(3721809..3724160)
Genome map
AA seq 783 aa AA seqDB search
MERISPVWPTGAAESARSGRGATAFVRLSNAEKVLYPATDTSPATTKADVFGYYTAIAPF
MLPHIAGRPVTRKRWPNGVDQPSFFEKDLASSAPDWLPRRRIEHKSRYVSYPLIDTSVAL
AWIAQQAALEVHVPQWRFAGENPGPATRLVFDLDPGEGVGMAQLAEVARAIRDVLADIGL
KTFPVTSGSKGLHLYVPLAQPASSSGAVAVAKKVAVQLEQAMPDLVTATMTRQLRAGKVF
VDWSQNSGSKTTVAPYSLRGRAVPTVAAPRTWEELDDPGLRQLRYDEVLTRAQRDGDLLA
GLDDVEIAEDRLSTYRSMRDPARTPEPVPAIKPEAGQNNSFVIQEHHATALHYDFRLERD
GVLVSWAVPKNLPLEPSVNHLAVHTEDHPLEYGSFEGTIPKGEYGAGEVTIWDSGTYDTE
KFIDPRDDSGADGGQKGEVIVTLHGKRITGRYALIRTSGKQWLAHRMKDQRPAGSMPVGL
APMLPTTGSVAGLTAEEWAFEGKWDGYRLILECDRGQLRALARSGRDVTAEFPALQRLAH
ELSDHRVVLDGEVVVPDQKGLPSFALLQNRTPGADIRFWAFDLLYLDGKSLLRTKYRDRR
RLLEVLVTGAESMTVPRQLSGDGAAALAYSQDQGWEGVVAKRLDSPYVPGRTQSWIKAKN
WSSQEVVIGGWRKGQGGRSSGIGALLMGIPVEGGLRYAGRVGTGFTEKELSSLKERLEPL
HRAESPFDVPLSTVEAKDVQFVEPVLVAEVRYGDRTPGGILKHSSWRGLRTDKSVRDVEL
DLG
NT seq 2352 nt NT seq  +upstreamnt  +downstreamnt
atggaacgcatatccccagtatggcccaccggagccgcggagtcggcgagatccggccgg
ggggcaaccgcgttcgtccggctgtccaacgccgagaaagtgctgtacccggccacggat
accagcccggccaccaccaaagcggatgtcttcggctactacaccgcgatcgcccccttc
atgttgccgcatatcgcgggccggccggtcacccgcaagcggtggcccaacggcgttgac
cagccgtcgttcttcgagaaggacctggcttcttcggcgcccgactggctgccgaggcgc
cgtatcgagcacaagtcccgctacgtcagctacccgctgatcgacacctcggtcgccttg
gcgtggatcgcgcagcaggcggcgctcgaggtgcacgtgccacagtggcgattcgccggt
gaaaatccaggtccggcaacccggttggtgttcgacctggatcctggcgagggggtcggc
atggcccaactggcggaagtggccagggccatccgggatgtgctcgccgatatcggcctg
aagacctttccggtgaccagtggaagcaagggcttgcacctgtacgtgccgctggcgcaa
ccagccagctcgtccggtgcggtcgctgtggcgaagaaggttgccgtccagttggagcag
gcgatgcccgacttggtgacggcgacgatgacccgacagctacgcgcgggcaaggtcttc
gtggattggagccagaacagcggttccaagacgacggtggcgccctactcattacgtggc
cgggcggtgccgaccgtcgccgcgccgcgcacgtgggaagaactggacgaccccggcctg
cgtcagctgcgatacgacgaagtgctgacgcgggcccagcgtgacggcgacctgctggcc
gggctcgatgatgtcgagatcgccgaggacaggctgtccacctatcgcagcatgcgcgat
cccgcacgcacgcctgaaccggtaccggcgatcaaacccgaagctgggcaaaataattca
tttgtcatccaggagcatcacgccaccgcgctgcactacgacttccggctggagcgcgat
ggcgtgctggtgtcgtgggcggtgcccaagaacctgcccttggaaccgtcggtcaatcat
cttgcggtgcacaccgaggatcatccgctggagtacggctccttcgaaggcaccatcccg
aagggagagtatggggcgggcgaggtgacgatctgggactcgggcacttacgacaccgag
aagttcatcgacccgcgcgacgattcaggagccgacggcgggcaaaaaggtgaggtcatc
gtcaccctccacggcaagcgaatcaccgggcggtacgcgctgattcgaaccagcggcaag
cagtggctggcgcaccggatgaaggatcagcggcccgcaggttcgatgcccgtcggtctc
gcgccgatgttgccgaccaccgggtcggtggcgggtctgaccgccgaagaatgggcgttc
gaaggcaaatgggacggctatcggctgatcctggaatgcgatcgcggacagctcagggca
ttggcgcgcagcgggcgcgacgtcacggccgaattcccggcgttgcaacggcttgcgcat
gaactgtccgatcaccgggtggtgctcgacggcgaggtggtggtgccggatcagaagggc
ctgcccagctttgcgctgctgcagaacaggacaccgggcgccgacatcaggttctgggct
ttcgatctgctgtatctggacggaaaatcgttgttgcgtaccaagtatcgggaccgacgt
cgactgcttgaggtgcttgttaccggcgccgaatcgatgacagtcccgcggcagttgagc
ggcgacggtgccgcggcccttgcgtactcgcaggatcaaggctgggagggcgtggtggcc
aagaggctggattccccctacgttcccggccgaacacagtcttggatcaaggcgaagaac
tggagtagtcaagaggtcgtcatcggcggctggcgcaaggggcagggcggtcgcagcagc
ggaataggggccctgctcatgggaatacctgtcgagggtggtctgcgctatgcgggccgg
gtcggtaccggattcaccgagaaggaactgtcatcgctgaaggagcgtctagagcccctg
caccgcgccgaatcgccctttgatgtgccgctgtccaccgtcgaggccaaggacgtgcag
ttcgtcgagccggtgttggtggccgaagtccgatacggcgaccgcaccccgggcggaatt
ctgaagcactcaagttggcgcgggctgcgcaccgacaagtcagttcgcgacgtcgagctc
gatctcgggtag

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