KEGG   Myotis davidii: 102763533Help
Entry
102763533         CDS       T02992                                 

Gene name
LIG1
Definition
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
myd  Myotis davidii
Pathway
myd03030  DNA replication
myd03410  Base excision repair
myd03420  Nucleotide excision repair
myd03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:myd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    102763533 (LIG1)
   03410 Base excision repair
    102763533 (LIG1)
   03420 Nucleotide excision repair
    102763533 (LIG1)
   03430 Mismatch repair
    102763533 (LIG1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:myd03032]
    102763533 (LIG1)
   03400 DNA repair and recombination proteins [BR:myd03400]
    102763533 (LIG1)
Enzymes [BR:myd01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     102763533 (LIG1)
    6.5.1.6  DNA ligase (ATP or NAD+)
     102763533 (LIG1)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     102763533 (LIG1)
DNA replication proteins [BR:myd03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    102763533 (LIG1)
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     102763533 (LIG1)
DNA repair and recombination proteins [BR:myd03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     102763533 (LIG1)
   NER (nucleotide excision repair)
    Other NER factors
     102763533 (LIG1)
   MMR (mismatch excision repair)
    Other MMR factors
     102763533 (LIG1)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C DDR
Motif
Other DBs
NCBI-GeneID: 102763533
NCBI-ProteinID: XP_015423439
LinkDB All DBs
Position
Un
AA seq 974 aa AA seqDB search
MQRSIMSFFHPTKEGKAKKPEETPSSARETEPPPKVALKERNGVVPESDSPVKRSGRKTA
RVLCSEGEEEEDDEAITSSKGQKPAPSSPQVSPPAPVTSPESSPSLAGTSPAATISPSGI
PKRLTARKQFSKRKIQDVLEEHGTDKGQEAKRKKAEEEAETPTENLPEPEGAKEKKAEEG
DLPMMPPEPQNACKAEPPTESGSEPMEVAKQEPQDEEQAKPPPRAPKMLSSFFTPRKPAV
KQEVKEEGPGTPRKEASKGLSHSDVSSRLANYFHLLPGLEQCLAMAGAQETLVGGAGFSS
TQHLSLAWQSLSSSSRLRMVETLSNLLRSVVALSPPDLLPILYLSLNCLGPPQQGLELGV
GDGVLLKAVAQATGRQLELVRAEAAETGDVGLVAENSRSTQRLMLPPPALTASGVLAKFR
DIARLTGSASTARKMDIIKGLFVACRHSEARFITRALSGRLRLGLAEQSVLAALAQAVSL
TPPGQEFPPAVVDAGKGKTAEARKTWLEEQGMILKQTFCQVPDLDRIVPVLLEHGLEGLP
EHCKLSPGVPLKPMLAHPTRGVSEVLKRFDEAAFTCEYKYDGQRAQVXGGRVHPFSRRDR
AGEQGVGAADPAQARPPQIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDAA
EIQVQVCLYAFDLIYLNGESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDMDQIAE
FLEQSVKVPLEGLMVKTLDVDATYEIAKRSHNWLKTVSCSEGRNLSCLDTAPMHPQGRAP
ARLTVGTNYLPLSLPLSVLISRLGSQGLCLAFIPSPISPHPPLLALYFKECLCLCLPPFT
SLPNPQPSILILRPETLSSTSRCSLQARVLPAPRSYVRADGAVAPDHWLEPSTGWXVRCA
DLSLSPIYPAARGLVDSEKGISLRFPRFVRVREDKTPEQATTSAQVAWLYKRQSQIQNQE
DTDQDSDPDLECFY
NT seq 2925 nt NT seq  +upstreamnt  +downstreamnt
atgcagcgaagcatcatgtcgtttttccaccccacgaaagagggcaaagcaaagaagccg
gaggagacacccagcagcgccagggagaccgagccccctccaaaggtggcgctgaaggag
cggaacggagtggtgcctgagagcgactctccggtgaagaggtcgggcaggaagacggcc
cgggtcctgtgcagtgaaggggaggaggaggaggacgatgaagccatcacgtcctccaaa
ggccagaagcctgcccccagctctccacaagtgtcccctcccgctcctgtcacgtcccct
gagagcagcccgtccctcgccggcacctctccggcagcgaccatctccccgtcggggatc
ccgaagcggctcacagctcgaaagcagttttctaaacggaagattcaggatgtcctagaa
gagcacggcacggacaagggccaggaagccaagaggaagaaggcggaggaagaagcagag
accccaacagaaaacctcccagaaccagaaggggccaaagagaagaaagcagaagagggg
gacctgcccatgatgccccccgagccccaaaacgcctgcaaagctgagcctccgacagaa
agcggctcagagcccatggaggtggcgaagcaggaaccccaggacgaggagcaagccaag
ccgccccccagagctcccaagatgctcagcagtttcttcaccccccggaagccggcagtc
aaacaggaagtgaaagaagaggggcctggcaccccaagaaaggaggcgtccaagggactc
tcccactcggatgtgagctccaggttagcaaactattttcatttacttccgggcctagaa
cagtgcctggccatggcaggtgctcaggaaacgttagtcggaggagcgggcttctcttca
acccagcatctgtccctggcctggcagtccctctcctcctcctccaggctccggatggtg
gagacgctgagcaacttgcttcgctccgtggtggccctgtcgcccccagacctcctcccc
atcctctacctcagcctcaactgcctcgggcccccccagcagggcctggagctgggcgtc
ggggatggtgtcctcctcaaggcggtggcccaggccacaggtcggcagctcgagttggtg
cgggctgaggctgccgagacgggcgacgtggggctggtggccgagaacagccgcagcacc
cagaggctcatgctgcccccgcccgccctcactgcctccggggtcctcgccaagttccga
gacatcgcccggctcactggcagcgcttccacagccaggaagatggacatcattaagggc
ctctttgtggcctgccgccactcagaagcccgattcatcaccagagccctgagtggacgg
ttgcgcctggggctggcagagcagtcggtgctggccgccctcgcccaggccgtgagcctc
acgcctccaggccaagaattccccccggccgtggtggatgctgggaagggcaagacagca
gaagccagaaagacgtggctggaggagcaaggcatgatcctgaagcagacgttctgccag
gtgcctgacctggaccggatcgtcccggtgctgctggagcatggcctggaggggctcccg
gagcactgcaagctgagtccaggggtccccctgaaaccaatgttggcccacccgacccgg
ggcgtcagcgaggtcctgaagcgcttcgatgaggcagccttcacttgcgagtacaaatac
gacgggcagagggcacaggtanntggggggcgggtgcatcccttcagcagaagggacagg
gccggagagcagggcgtgggggcagcagacccagcccaggcccggcccccacagattaaa
ctcccgtcggtcacgtctttcatcctggacacagaagccgtggcttgggaccgggagaag
aagcagatacagccgttccaagtgctcaccacccgcaaacgcaaggaggtggatgcagcg
gagatccaggtgcaggtgtgtttgtacgccttcgatctcatctacctcaacggagagtcc
ctggtccgagagcccctttcccgacgccggcagctgctccgggagaacttcgtggagacg
gagggcgagtttgtcttcgccacctccctggacaccaaggacatggaccagatcgcggag
ttcttggagcagtcggtgaaagtgcccctcgaggggctgatggtgaaaaccctggacgtc
gatgccacctacgagatcgccaagagatcacacaactggctcaagactgtaagctgctct
gagggcaggaacctttcctgtctcgacacagcccctatgcacccccaaggccgagctcct
gcccggctcacagttggcactaactatctgcccctctctctacctctgtcagtcttaatt
tctcgtctcggctcccagggactctgtcttgcgtttattccttctcccatttctccccac
cccccactcctggctctgtactttaaggagtgtctgtgtctctgtcttcccccatttacc
tcacttcccaacccccaaccctccatcttgattctgaggcccgagaccctctcttccacc
tcccgctgctccctgcaggcccgggtgctgcccgcccctcgctcctacgtccgggcagac
ggcgccgtggccccggaccactggctggagcccagcaccggctgggnggtcaggtgtgcg
gacctctccctctcgcccatctaccccgctgcccgcggcctggtggacagtgagaagggc
atctcccttcgcttccctcggtttgtccgcgtccgtgaagacaagacgccggagcaggcc
accaccagtgcccaggtggcctggctgtacaagaggcagagtcagattcagaaccaggag
gacacagaccaagactccgacccggacctggagtgtttctactag

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