Mizuhopecten yessoensis (Yesso scallop): 110445164
Entry
110445164 CDS
T05079
Definition
(RefSeq) DNA ligase 4-like
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
myi
Mizuhopecten yessoensis (Yesso scallop)
Pathway
myi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
myi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
110445164
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
myi03400
]
110445164
Enzymes [BR:
myi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
110445164
DNA repair and recombination proteins [BR:
myi03400
]
Eukaryotic Type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
110445164
SSDB
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
BRCT_2
BRCT
DNA_ligase_IV
mRNA_cap_enzyme
Other DBs
NCBI-GeneID:
110445164
NCBI-ProteinID:
XP_021345286
LinkDB
Position
Unknown
AA seq
917 aa
MADANDDDKPSVTVASKVSFAELCGLLEKISKTQGNDKKKRILTEFVDKWRDFHNSLHKD
DKKDTTDSFYPAMRLLLPHHEKERVAYGIKEHMLAKLLIEVLCLGKDSADANRLLNYKAP
KTARADAGDFAGVTYFVLKNRCPEKGTLTIQEVNDCLDGIAQNNAAKKKDLVRKNVLRLL
TNMTAVELKWLIRMIVKELKVGLSQASVLSVYHPDAEDFFNVNNNLEKVCRMLRERSVRV
HEIGISIFSPFSPMLGERASPDEVEKLMEGKTYFLETKFDGERMLLHKRDNEYKYFSRSA
NEYTATFGSNSFDGNFTQYIHDLFKPGIKSCILDGEMLGYHAETKTYATKAMNTDIKRQQ
QEGYQPCYNIFDIVVLNDKVLTNKPLRERLQLLETVIDPEEGRIQISKHTEANTNQECAD
ALNKAIDGREEGIMVKNPDSVYRPNTRKGGWIKIKPEYVGGLMDELDVVVVGGYLGVGHR
GGMMSHFLCAVAVPVDDGEKPEVFHSFCKVGSGYSKKELGEVNEKLKDHWKAFDKRNPPT
SIILASGFKEKPDAWIEPSNSVIVQIKAAEIIDSDRFKTNCTLRFPRVECFRDDKAWHDC
MTVTDILELKEKSGGKLAGGKVELAEGEEPVKKKRKIVSRVVRPTLGAQFMGADLTSVTQ
VSKMLEGKEFCVINGPSSFPKHAIETKIVEFGGKIVQNPGPSTFCVLADKVAVRVTNLIK
RDMYDVVKVSWFQRCVDASRWLPWSPADMIHTSPKTQLDFQKQYDEFGDSYVDPTSPEQL
KTVFSRISKVENGMTDALDIAEIEQAYFPDDSPYGMFRTCRFYMDDSLVIDDKSTKSKNS
FLDFLALELRFFGGAIAEEIDPAVSHVMMDNSDLSRLEEIKEMRRQRRKKFHIVTRFWVR
ECMQEGTLVSERRFEPS
NT seq
2754 nt
+upstream
nt +downstream
nt
atggcggacgctaacgacgatgacaaaccatccgtaactgtcgcatccaaagtatcattt
gcagaactctgtggactgcttgagaaaatatccaaaacacaaggaaatgacaaaaagaaa
cgaattttaacagaatttgttgataaatggagagattttcataactcactacacaaagac
gataaaaaagacacgactgattccttttatcctgccatgcgattgttacttcctcaccat
gagaaggagagagtggcatacggaataaaagagcatatgttggccaaactactgatcgag
gtgttgtgtttagggaaggatagtgctgatgccaacaggctgcttaactacaaagctccg
aaaacagccagagcggacgctggagattttgcgggtgtgacctactttgtgttgaagaac
cgctgtccagagaagggaacactgaccattcaggaggtcaatgactgtctggacggcatc
gctcagaacaatgcggccaagaagaaggatttggtgaggaagaatgttctgcggctgttg
actaacatgacagcagtggagctcaagtggctcatcaggatgattgtgaaggaactgaag
gtggggctgagtcaggcatctgtcttatcagtgtatcatccggacgctgaggacttcttc
aacgtcaacaataacctggaaaaggtgtgtcggatgctgagggagcggagtgttcgggta
catgagatcggtatcagcatcttctcacccttctcgccgatgctgggggagagagcctca
cctgatgaggtggagaaactgatggaggggaaaacctacttcctagagacaaagtttgat
ggagaacgcatgctgttacataaacgtgacaatgaatacaagtacttctctaggagtgct
aacgagtacacagccacatttgggtccaacagctttgacgggaatttcacgcagtacatt
cacgacttgttcaagcctggaatcaagtcttgtatattagatggagaaatgctgggatac
catgctgaaactaagacttatgctaccaaggccatgaacacagacatcaaacgacaacaa
caggaagggtatcagccatgctataacatatttgatatcgtggtactcaatgacaaagtg
ctcaccaacaagcccctgagggagcgacttcagctgctggagacggtgatcgaccccgag
gaggggcgcattcagatcagcaagcacactgaggccaacacaaatcaggagtgtgctgac
gccttgaacaaagctatagacggcagagaggaggggataatggtaaagaaccctgactca
gtctacagacccaacaccaggaagggtgggtggatcaagattaaaccggagtacgtgggg
ggtctgatggacgagcttgatgttgtagtggtgggtgggtacctgggtgtcggccaccgt
ggcgggatgatgtcacacttcctctgtgctgtggcagtccctgtggatgacggagaaaaa
cctgaagtgttccattccttctgtaaggttggatctggatattctaaaaaagagctaggg
gaagttaatgagaagttgaaggatcattggaaggcgtttgacaagaggaaccctccgacc
tccatcattctggcctctggcttcaaggagaagccagacgcttggatagagcctagtaac
tcggttattgtccagataaaagcagcagagatcattgacagtgaccggtttaaaacaaat
tgtaccctgaggtttcctcgggtcgagtgtttccgtgacgacaaggcctggcatgattgt
atgactgtcacagacattttggaactgaaggagaagtctggaggtaaattagcgggtggt
aaggtggagcttgcggaaggagaggaaccagtaaagaagaaaagaaagattgttagtcga
gtggttcgcccgacccttggagctcagtttatgggagccgacctcacgtctgtcacacag
gtatcaaagatgttggagggaaaagagttttgtgtgattaatggcccatcgtcatttcca
aagcatgccatagaaacaaaaattgtagaatttggtggcaaaatagttcaaaatccaggt
ccgtccacgttctgtgtcctggcagacaaggtggctgtccgcgtcacaaacctcatcaaa
cgggacatgtacgatgttgttaaggtgtcgtggttccagcgttgtgtggatgccagccga
tggttaccatggtccccagctgatatgattcacacgtcacccaagacccagctggatttc
cagaagcaatatgatgagtttggggacagctatgtagatccgaccagtcctgaacaactg
aagactgtgtttagtagaatatctaaggttgaaaatgggatgacagatgccctggacata
gctgagatagagcaggcgtacttccccgatgattctccgtatggaatgttccgtacctgc
aggttttacatggatgacagtctagtcattgatgacaaatccacgaaatcaaaaaattcc
ttcctggacttcctggccctggagttacggttctttggtggtgccattgctgaagagatc
gaccctgctgtttctcatgttatgatggacaacagtgaccttagtcggctggaggaaata
aaggaaatgaggagacagaggaggaagaagtttcacattgtcactagattctgggtcaga
gaatgtatgcaggagggaaccctagtgtcagaacgcagatttgaaccatcctaa
DBGET
integrated database retrieval system
