KEGG   Mycetocola sp. 449: C3E77_07890Help
Entry
C3E77_07890       CDS       T05409                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
myl  Mycetocola sp. 449
Pathway
myl03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:myl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    C3E77_07890
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:myl03400]
    C3E77_07890
Enzymes [BR:myl01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     C3E77_07890
DNA repair and recombination proteins [BR:myl03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     C3E77_07890
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M LigD_N DNA_ligase_A_C RNA_ligase DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID: AWB86543
LinkDB All DBs
Position
1667117..1669618
Genome map
AA seq 833 aa AA seqDB search
MAKSGSRQTVDVDGRRITLTNLDKVLYPETGTTKADVLRYYAEIADVMVPYTAGRPATRK
RWVHGVGTPDKPGEVFYQKNLDDSTPEWVARRSIEHSSRNNDYPLVNDRATLAWLAQIAA
LEIHVPQWQFERTGGARNPDRLVLDLDPGEGLTLADCAAVAFLARDILSDMGLNPLPVTS
GSKGIHLYAALDGSLPSDTVSSVAHELARALEADHPDLIVSDMKKSLRVGKVLIDWSQNN
SAKTTIAPYSLRGRFTPTVAAPRSWEELESPTLAQLDFEEVLERVARDGDLLAPLASART
GGLEPTPDHMARFESTAEATDRLAKYRSMRDGTKTPEPVPEAVAALTSGNSFVIQEHHAR
RLHYDFRLEHDGVLVSWAVPKGPPLTSDENHLAVQTEDHPLEYGTFEGRIPKGEYGAGEV
TIWDSGTFELEKWREDKEVIVTLSGQDDGGLGGVPRKYALIHTKRPGAENNWLIHLMDPA
AKKSGSGHAPTRERAPDPAPAAPERRSSITAPATPLGREIIRPMLAANGNASDIDDEHEW
AFEMKWDGYRAVVYIDGGAVRLLSRNGNDLTDTFPELAGPLGKAIGATSAVLDGEIVAMD
KTGRPNFHLLQSRAGLSDDEAAARTANIELMLFDLLELEGHDITGEEYDVRRAALDRTVT
PTGPVQVPPEFDGDVEAAIASSLELGLEGIVAKERDSPYLPGKRSRSWIKVKHAKTQEVI
VVGWRPGAGSAANAVGSLVLGIPDADGIRYAGRVGTGFTDKDRRSFLKKFASMGVDSPPV
HDAPSDELTHAKWIRPELVGEVTFLQWTSTGALRHSSWRGWRPDKSPEDVVVE
NT seq 2502 nt NT seq  +upstreamnt  +downstreamnt
atggcgaagtcaggctcccgccagaccgtcgacgtcgatggccggcgaattacactcacc
aacctggacaaggtgctctaccccgagaccgggacgaccaaggcagacgttctgcgctac
tacgccgagatcgccgatgtcatggtgccgtacacggcgggccgacccgcaacgcgcaag
cgctgggtccacggcgtcggcacccccgacaagccgggcgaggtgttctatcagaagaac
ctcgacgactcgacgccggagtgggttgcgcgccgctcgatcgagcacagcagcaggaac
aatgactatccgctcgtcaacgacagggcgacgctggcctggctcgcgcaaatcgcagcc
ctcgagattcacgtaccgcagtggcagttcgagcgcaccggtggcgcacgcaaccccgac
cgcctggtgctcgacctggacccgggcgagggtctcaccctggcggactgtgcggctgtc
gccttcctcgcgcgggacatcctctccgatatggggttgaatcccctgccggtgaccagc
ggcagcaagggaattcacctctacgcggcgctcgacggctcactgccgagcgacaccgtg
tcgagtgttgcgcacgaactggcgcgggcgctcgaagcggatcatccggatctcatcgtg
agcgacatgaagaagtcgcttcgcgtcggtaaagtgctcatcgactggagccagaacaac
agcgccaagaccacgatcgcaccctattcgctcagggggcggttcactccgacggtggcg
gcaccacgttcgtgggaggaactggagtccccgacgctcgcgcaactcgattttgaggag
gttctcgagcgtgtcgctcgcgacggtgaccttctcgcaccgctggcatccgcccgcacc
ggcggacttgagccgacaccggatcacatggcgcggttcgagagcacggcggaggccacg
gaccggctggccaagtaccgcagcatgcgcgacgggacgaaaacccccgaaccggtgccc
gaagcggtcgccgcgctgacctcgggcaactcgttcgtcatccaggagcatcacgcccgc
cgcctgcactacgactttcggctcgagcacgacggagtcctcgtgtcgtgggctgtgccg
aagggcccgccgctcacgagcgacgagaatcacctggcggttcagaccgaagaccacccg
ctcgagtacggaacgttcgaggggcgcatccccaagggggagtacggtgctggcgaggtc
accatctgggactcgggcacattcgaactggagaagtggcgagaagacaaggaagtcatc
gtgacactctccggtcaggacgacggcgggctcggaggggtcccgcgcaagtacgcgctg
attcacaccaaacgcccgggtgccgagaacaactggctcatccacctcatggacccggcg
gcaaagaaaagcgggagtgggcacgcgccgacgcgggaacgggctcccgacccagcaccg
gcagcgccagagcgccgctcgtcgatcaccgcgcccgcaaccccgcttgggcgcgagatc
atccgcccgatgctcgccgccaacgggaacgcgtccgacatcgacgatgagcacgaatgg
gcattcgagatgaagtgggacggttatcgtgccgtcgtgtacatcgacggcggcgccgtt
cgcctcctgagccgcaacggcaacgacctcaccgacacgttccccgaacttgccggcccg
ctcggcaaagccatcggtgcgacctctgctgtactcgacggcgaaatcgtcgcgatggac
aagacgggcaggccgaacttccacctcctgcagtcgcgcgccgggctgagtgacgacgag
gccgcggctcgaactgcgaacatcgagctcatgctcttcgacctgctcgaactcgagggc
cacgacatcaccggcgaggagtatgacgtgcgacgcgctgccctcgacaggacggtgacc
ccgaccgggccggtgcaggtgccaccggagttcgacggtgacgtcgaggcagcgatcgcg
tcgagcctcgaactcggccttgagggcatcgtcgcgaaggaacgcgacagcccgtacctc
cccggtaagaggtcgaggtcatggatcaaggtcaagcacgcgaagacgcaggaagtaatc
gtcgtcggctggcgcccgggtgcgggcagcgcggcaaacgccgtcggttcgctcgtgctc
gggattcccgacgccgacggcatccgctatgccggccgggtaggcacaggattcaccgac
aaagaccggcgatccttcctgaagaagttcgcatcgatgggcgtcgactccccaccggtg
cacgatgcgccgagcgacgaactgacgcacgcgaagtggatccggcccgaactcgtcggc
gaggtcacattcctccagtggacatcgacgggagcactgcgccattcgtcgtggcgtggc
tggcggccggacaagtcgccggaagacgtggtcgtcgagtaa

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