KEGG   Mycobacterium sp. NRRL B-3805: MyAD_22245Help
Entry
MyAD_22245        CDS       T05013                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
myn  Mycobacterium sp. NRRL B-3805
Pathway
myn03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:myn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    MyAD_22245
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:myn03400]
    MyAD_22245
Enzymes [BR:myn01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     MyAD_22245
DNA repair and recombination proteins [BR:myn03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     MyAD_22245
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: AMO08595
LinkDB All DBs
Position
complement(4770005..4772299)
Genome map
AA seq 764 aa AA seqDB search
MVERVGRVKLTNPDKVLYPQTGTTKAEVFDYYVAVAAAMLPHIAGRPVTRKRWPNGVGQS
DFFEKQLASSAPDWLRRGSVTHRSGTTTYPIIDTAEGLAWIAQQASLEVHVPQWRFDPHG
APGPATRIVFDLDPGEGVTFRQLCEVAHEVRGYVEDIGLTAYPLTSGSKGVHLYVPLADP
ISSHGASVLAKRIALALEKSMPTQVTATMTRSLRDGKVFVDWSQNSAAKTTIAPYSMRGR
AAPTVAAPRSWEELADPDLRQLNFEEVLHRLERDGDLLADLDDPLPVEDRLSTYRTMRDA
GKTPEPVPTAPPAVGHDNTFVIQEHHARRLHYDFRLERDGVLVSWAIPKNLPETTSVNHL
AVHTEDHPLEYAGFEGDIPAGEYGGGKVIIWDAGTYEAEKFRDPGVDGEKPIDTDGKGQA
KGEVIVTLHGAKVRGRYALIQTGGKNWLAHRMKEQPGTTVADLKPMLATHGSVAKLKPAG
WAFEGKWDGYRMLVEIDHGELMLRSRSGRDITAEFPQLRSLAADLADHRLILDGEVVALD
ADGVPSFGAMQNRSSGSNIEFWAFDLLAMDGRSLLRAKYRDRRKLLELLGRDGALIVPDL
LDGDGAAALEYVREHGYEGVIAKKWDSTYQPGRRSQSWIKDKLWRTQEVVIGGWRAGEGG
RTSGIGALVVGVPGRDGLQFVGRVGTGFTEKMLTDLRTTLAPLETSDSPFTARLSGPDAR
GVTYVRPELVGEVRYSERTSDNRLRQPSWRGLRPDKSPDQVVWE
NT seq 2295 nt NT seq  +upstreamnt  +downstreamnt
gtggtggagcgtgtgggccgggtcaaactgacgaatccggacaaggtgctgtatccgcag
accggcaccaccaaggccgaggtgttcgactactacgtcgcggtcgccgcggcgatgctg
ccgcacatcgccggccgcccggtcacgcgcaagcgatggcccaatggcgtcggccaatcg
gacttcttcgaaaagcaactcgcgtcgtcggcgccggactggctgcgccggggatcggtg
acgcaccgctccggtaccacgacctaccccatcatcgacaccgccgaaggattggcctgg
atcgcccagcaggcatcgctggaggtgcacgttccgcagtggcggttcgacccgcacggc
gcgcccgggccggccacccgcatcgtgttcgacctcgatccgggagagggtgtgaccttc
cggcagctctgtgaggtcgcccatgaggtgcgcggctacgtcgaggacatcggcctgacc
gcctacccgctgaccagcggcagcaagggcgtgcacctgtacgtgccgctggccgatccg
atcagctcccacggggcttcggtgctggccaagcgaatcgcgctggcgctggagaagagc
atgccgacccaggtcaccgccaccatgacgcgcagcctgcgggacggaaaggtgttcgtg
gactggagccagaacagcgcggccaagaccaccatcgcgccctactcgatgcgtggccgc
gccgcgcccaccgtggccgcgccgcgcagctgggaggaactcgccgatcccgacctacgg
cagctgaacttcgaagaggtgctgcaccgactggaacgcgacggcgatctgctggcagat
ctggatgatccgctgcccgtcgaggaccgactgagcacgtatcgcaccatgcgcgatgcc
ggtaagacccccgaaccggtcccgacggcaccgcccgcggtggggcacgacaacaccttc
gtcatccaagagcatcacgcgcgccggctgcactacgacttccggctggaacgcgacggg
gtgctggtgtcctgggcgatcccgaagaacctgcccgagacgacatcggtgaaccacctg
gccgtccataccgaggaccatccgctggaatacgccggcttcgaaggggacatcccggca
ggggagtacggcggcgggaaggtgatcatctgggacgccgggacttacgaggccgagaag
ttccgcgatcccggtgtcgacggtgagaagccgatcgacacggacggaaaggggcaagca
aagggggaggtgatcgtgacgctgcacggcgccaaggtgcgtggacgttacgcgctgatc
cagaccggcggaaagaactggctggcgcaccgcatgaaggagcagcccggcacgacggtg
gccgacctgaaaccgatgctcgcgacccacgggtcggtggcgaagctgaaaccggcaggc
tgggcgttcgagggcaagtgggacggataccgcatgctggtcgagatcgatcacggtgag
ttgatgctgcgctcgcgcagcggtcgcgacatcaccgcggagttcccgcagttgcgttcg
ctggcagccgatctcgccgatcatcggctgatcctcgacggtgaggtcgtggcattggat
gccgacggtgtgccgagcttcggtgccatgcagaatcggtcgtcgggcagcaatatcgag
ttctgggcgttcgatctgcttgccatggatggccgttcgttgttgcgggcgaagtatcgc
gaccgccgaaagctgctggaactgctgggccgggatggcgcgctcattgtgccggatctg
ctcgacggtgacggcgccgccgcgctggagtacgtgcgcgagcacggttatgagggcgtg
atcgccaagaaatgggactcgacctatcaaccggggcgacggtcgcagtcctggatcaag
gacaagctgtggcgcacccaggaagtggtcatcggcggctggcgggccggcgagggcggt
cgcaccagcgggatcggcgcactggtcgtgggtgtcccgggccgggacggactgcagttc
gtcggccgtgtcggtaccggtttcaccgagaagatgctcacggacctgcggaccacattg
gcgccgttggagacgtcggattcacccttcaccgcacgcctttccgggccggatgccagg
ggggtcacctacgtgcgtcccgaactggtgggtgaggtccgctatagcgagcgcacgtcg
gacaatcggctgcgtcagcccagctggcgaggattacggccggacaagtcgccggatcag
gtggtctgggagtag

DBGET integrated database retrieval system