KEGG   Mycobacterium intracellulare subsp. yongonense: OEM_09450Help
Entry
OEM_09450         CDS       T02732                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
myo  Mycobacterium intracellulare subsp. yongonense
Pathway
myo03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:myo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    OEM_09450
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:myo03400]
    OEM_09450
Enzymes [BR:myo01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     OEM_09450
DNA repair and recombination proteins [BR:myo03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     OEM_09450
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: AGP62481
UniProt: S4Z4Z1
LinkDB All DBs
Position
920808..923075
Genome map
AA seq 755 aa AA seqDB search
MSPTAGPRVKLTNAEKVLYPATGTTKSDIFDYYTRIAEVMIPHIAGRPATRKRWPNGVEQ
ESFFEKQLAASAPDWLPRASVTHRSGTTTYPIIDDPTGLAWIAQQAALEVHVPQWRFVAE
WTRSRAEELKPGPATRLVFDLDPGEGVTMAQMSKVARAVRDLIAGIGLRTFPLTSGSKGL
HLYAPLDEPVSSKGATVLAKRVAQQLEKTMPKLVTSTMTKSLRAGKIFLDWSQNNGSKTT
IAPYSLRGREHPTVAAPRTWDELDDPSLRQLRYDEVLSRVARDGDLLAELDEDAPVPDRL
TKYRSMRDASKTPEPVPAAKPAVGQGNTFVIQEHHARRLHYDFRLERDGVLVSWAVPKNL
PETTSVNHLAVHTEDHPLEYGGFEGVIPKGEYGAGKVIIWDSGTYDAEKFLDDEVIVNLH
GSKISGRYALIQTNGDQWLAHRMKDQKVFEFDTIAPMLATHGSVTALKAGQWAFEGKWDG
YRLLIEADHGAFRVRSRRGREVTQEYRELRWLADDLADHHVVLDGEAVVLDSSGVPNFHE
MQNRGRGSRVEFWAFDLLYLDGRSLLRARYRDRRKLLEMLAAGSRLIVPDLLPGDGREAL
EHSAERGWEGVIAKKRDSTYQPGRRSSSWIKDKHWNTQEVVIGGWKAGEGGRSSGIGSLL
MGIPTAGGLHFAGRVGTGFTDRDLANLKKTLAPLHTDESPFDPPLPRSEARGVTYVRPEL
VGEVRYSEWTPDDRLRQSSWRGLRPDKEASEVVRE
NT seq 2268 nt NT seq  +upstreamnt  +downstreamnt
atgagtccgacggcggggccacgggtcaagctgaccaacgccgaaaaagtgctgtatccc
gccaccggaaccaccaagagcgacatcttcgactactacacgcggatcgccgaggtgatg
atcccgcacatcgccgggcgtccggccacgcgcaaacgctggcccaacggcgtcgaacag
gaatccttcttcgagaagcaactcgccgcgtcggcacccgactggctgccgcgcgccagc
gtgacccatcgatccggaacgacgacctatccgatcatcgacgaccccaccggcctggcc
tggatcgcccaacaggcggcgttggaggttcacgttccgcagtggcggttcgtcgccgag
tggacccgcagccgggccgaagaactcaagcccgggccggcgacgcgattggtgttcgac
ctcgaccccggcgaaggcgtgacgatggcgcagatgtccaaggtggcgcgcgccgtgcgc
gacctgatcgccgggatcgggctgagaaccttcccgctcaccagcggcagcaagggactg
catctgtatgcgccgctcgacgagccggtgagcagcaaaggcgccacggtgttagccaaa
cgcgttgcgcaacagctggaaaagacgatgcccaagcttgtcacgtcgaccatgaccaag
agcctgcgggcggggaagatctttttggactggagccagaacaacggctccaagacgacc
atcgcaccgtattccctgcgcggacgcgaacatcccaccgtcgcggcgccgcgcacctgg
gacgaactcgacgacccgtcgctgcgccagctgcggtatgacgaagtgctgtcccgggtc
gcgcgcgacggcgacctgcttgcagagctggacgaggacgctccggtgccggatcggttg
accaagtaccgcagcatgcgcgacgcgtcgaaaacccccgagccggttccggcggcgaaa
cccgctgtcggccaaggaaataccttcgtcatccaggaacaccacgcgcgacgcctgcac
tacgacttccggctggagcgcgacggcgtgctggtgtcctgggcggtgcccaaaaacctg
cccgaaaccacgtcggtgaaccacctggcggtccacaccgaggaccatccgctggaatac
ggcgggttcgaaggcgtcatccccaagggcgaatacggcgcgggcaaggtgatcatctgg
gactccggaacctacgacgccgaaaagttccttgacgacgaggtcatcgtcaacctgcac
ggcagcaagatctccggacgctacgcgctgattcaaaccaatggcgaccagtggttggca
catcggatgaaggaccagaaggtcttcgagttcgacaccatcgcacccatgctggccacc
cacggttcggtgacggccctgaaggcaggtcagtgggcgttcgagggcaaatgggacggt
taccggcttctgatcgaggccgaccacggtgcctttcgggtgcggtcgcgacgcggtcgc
gaagtcacccaggaataccgcgaactgcgttggctggcagacgatctcgccgaccatcac
gtggtgctcgacggggaggccgtcgtcctggactcctccggggtgcccaactttcacgag
atgcaaaaccgtggacggggctcacgggtcgaattctgggcgttcgacctgctctacctc
gacggccgctcgttgctgcgggcccgctaccgggatcggcgaaaactgctggaaatgttg
gccgccggcagcaggctcatcgtccccgacctactgcccggcgacggcagggaggcgctg
gagcactccgcggagcgcggttgggagggggtgatcgccaagaagcgcgactccacctat
cagccgggccgccgctcgtcgtcgtggatcaaggacaagcactggaacacccaggaagtc
gtcatcggcggttggaaagccggggaaggcggacgcagcagcggcatcggctcactgctg
atgggtatcccaaccgcgggcggactgcacttcgccgggcgcgtcggcaccgggttcacc
gaccgcgacctggcaaacttgaagaagacgctggcaccgctgcacaccgacgaatccccc
tttgacccaccgcttcccaggagcgaagcgcgcggcgtgacgtatgtgcggccggagctg
gtcggggaggtgcgctacagcgagtggaccccggatgaccggttacgccaatcgagttgg
cgcggactacgaccggacaaggaggcgagtgaggtggtgcgcgagtga

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