Myroides sp. ZB35: BK054_09140
Help
Entry
BK054_09140 CDS
T04543
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
myz
Myroides sp. ZB35
Pathway
myz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
myz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BK054_09140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
myz03019
]
BK054_09140
Enzymes [BR:
myz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BK054_09140
Messenger RNA biogenesis [BR:
myz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BK054_09140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
Helicase_C_2
AAA_22
CMS1
P-loop_SecA
Shikimate_DH
AAA_11
AAA_30
Motif
Other DBs
NCBI-ProteinID:
APA92375
LinkDB
All DBs
Position
complement(2031217..2032464)
Genome browser
AA seq
415 aa
AA seq
DB search
MTFEDLQLNKNILRAIDELGYKEPTPIQQKAIPFILAEKDLIGCAQTGTGKTAAFAMPII
HYLHKLGNTKKAKKAKVLIVTPTRELAVQIGDNFEKYAKYTNVTYITLYGGMSIKPQIEQ
LNKGADVIIGTPGRLLDLYKQKHLDLDHLHFLVLDEADLMLDMGFIDDVKKLIQLTPSNR
QTLLFSATMPLPIRELAHEFLQKPEYVAVDPISSTAQSVKQKVYFVEKGDKKKLLYHIIR
NEKLSDVLVFTRTKAGADTVVESLKKNGVNAEPFHGDMSQTARQAALDSFKNKETKVLVA
TDIAARGIDIDNLPVVINYDLPNIPETFVHRIGRTGRAGNDGVAISFCDKSEKTYWEAIC
KFGRLQPKIVTDHPFPWKETTTKDGQTPKKDYRKKPGQSNSRKSENSKKNKKRWY
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atgacattcgaagacttacaattaaataagaatatattacgtgccatagatgagctaggt
tacaaagaacctactcctattcaacaaaaagcaatcccttttatcttagctgaaaaggat
ttgataggatgtgcacaaactggtacaggtaaaacagctgcctttgcaatgcctattatt
cactatttacacaaacttggaaatactaaaaaagcaaagaaagctaaagtactgatcgta
actcctactcgtgaactagctgttcagataggcgataacttcgaaaaatacgctaagtat
actaatgtgacgtatatcacactatatggaggtatgtctatcaaacctcaaatagaacaa
ttaaacaaaggagcagatgttatcattggtactcctggtcgattattagatctatacaaa
caaaaacatttagacttagatcatctacacttcttagtattagatgaagctgacttaatg
ttagatatggggttcattgatgatgtcaaaaagttaatacaacttactccttctaataga
caaaccttattattttctgctacgatgccactccctattagagagttagcccatgaattc
ttacaaaaaccagaatatgtagcagtagatcctatttcttcaactgcacaatctgttaaa
caaaaagtgtacttcgtagagaaaggtgacaagaaaaagttattataccatatcattcgt
aacgaaaagttatctgatgtacttgtatttactcgtacaaaggcaggtgctgatactgta
gtagaatcacttaaaaagaatggtgtcaacgctgagccattccatggagatatgtcacaa
acagctagacaagctgctttagatagctttaaaaacaaagaaacaaaagtactagtagct
actgatatagctgcacgagggattgatatagataatctacctgttgtaattaactacgac
ttaccgaatatcccagaaacctttgtacaccgtatcgggcgtactggtagagctggtaat
gatggagtagctatctctttctgtgataaatctgagaagacctattgggaggctatttgt
aagttcggtagattacaaccaaagattgttacggatcatcctttcccttggaaagagact
actactaaagatggtcaaactcctaaaaaagattatagaaaaaaacctggtcagagcaat
tctcgtaaatcagaaaactcaaaaaagaataaaaaacgttggtattag
DBGET
integrated database retrieval system
