KEGG   Methylorubrum zatmanii: B2G69_05180
Entry
B2G69_05180       CDS       T04981                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
mza  Methylorubrum zatmanii
Pathway
mza03030  DNA replication
mza03410  Base excision repair
mza03420  Nucleotide excision repair
mza03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mza00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    B2G69_05180
   03410 Base excision repair
    B2G69_05180
   03420 Nucleotide excision repair
    B2G69_05180
   03430 Mismatch repair
    B2G69_05180
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mza03032]
    B2G69_05180
   03400 DNA repair and recombination proteins [BR:mza03400]
    B2G69_05180
Enzymes [BR:mza01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     B2G69_05180
DNA replication proteins [BR:mza03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     B2G69_05180
DNA repair and recombination proteins [BR:mza03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     B2G69_05180
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     B2G69_05180
   MMR (mismatch excision repair)
    DNA ligase
     B2G69_05180
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      B2G69_05180
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB BRCT HHH_2 DNA_ligase_ZBD PTCB-BRCT HHH_5
Other DBs
NCBI-ProteinID: ARO53598
LinkDB
Position
complement(1174310..1176757)
AA seq 815 aa
MPSTPLSAAVEDFSEDAAQARHAELSRAIERANQLYYNEDAPELTDAEYDALRQELEAIE
ARFPALTGTTEASAGVGAKPSEKFAKVRHAVPMLSLGNAFADEDVDEFVARVRRFLNLPA
EEAVAFTAEPKIDGLSLSLRYETGRLVTAATRGDGEVGENVTANALTVDDIPERLSGEGI
PEVLEVRGEVYLSHEDFAAINARQEAAGKPLFANPRNAAAGSLRQLDPAITASRPLRFFA
YAWGEVSEPFTDTQSAVLERFRGWGLPVNPRTKLCRSAEEMIAHYRTIEAERAGLGYDID
GVVYKVDDLGFQRRLGFVSRAPRWALAHKFAAQEAITELLAIDINVGRTGSLNPLARLKP
VTVGGVVVSNATLHNEGYVQGVGADGEPIREGRDIRVGDTVIVVRAGDVIPKVRDVVIDK
RPADAVPYVFPDTCPACGSRAVRELNPRTKKLDAIRRCTGGLICPAQGVERLKHFVSRNG
FDLEGFGQTYIEVLFEAGLVKQPADLFRLEFEPLKAAIVARREALSAQRRTEGEPAPKKP
TKKKGEEEDKAIKNLLASLDARRKIPLNRFLFALGIPQIGESTAKALAKRFPDMPALMAA
LAAATREQAGQDWLELSALPRIGPGTRDRLFETLDPLPGEAMQDLSLGARLRGRLTPSQR
EAVLAHYGSEAEADAALERAASQRPGDAYRLFADDGEIGPVATDSLIQFFSEPHNDAAVR
ALLEEVGTEPLAAPTASAAAFAGKTVVFTGSLEKMTRSEAKATAERLGAKVSGSVSAKTD
LVVAGPGAGSKLKDAEKHGVKVVSEDDWLAMLAEA
NT seq 2448 nt   +upstreamnt  +downstreamnt
atgccgagcacgcccctttccgccgccgtcgaagacttcagcgaggatgccgcccaggca
cgccatgccgagctatcgagggcgatcgagcgggcgaaccagctctactacaacgaggac
gcgcccgaactcacggacgccgaatacgacgccctgcgccaggagctggaggcgatcgaa
gcgcgctttcccgcgctgaccggcaccaccgaggcgagcgcgggcgtcggcgccaagcct
tcggaaaagttcgccaaggtccggcacgcggtgccgatgctctcgctcggcaacgccttc
gccgacgaagacgtggacgagttcgtcgcccgcgtgcgccgcttcctgaacctgccggcc
gaggaggcggtcgccttcaccgccgagccgaagatcgacgggctgtcgctgtcgctgcgt
tacgagacgggccggctcgtcaccgcggcgacgcggggcgacggggaggtcggcgagaac
gtcaccgccaacgcgctgacggtggacgacattccggaaaggctctccggcgagggcatc
cccgaggtgctggaggtgcgcggcgaggtctacctgtcgcacgaggatttcgcggccatc
aacgcgcgccaggaggcggcgggcaagccgctcttcgccaatccgcgcaacgccgcggcc
ggctcgctgcgccagctcgatccggcgatcaccgcctcgcgccccttgcgcttcttcgcc
tatgcctggggcgaggtctccgagcccttcaccgacacgcaatcggcggtgctggagcgg
ttccgcggctggggcctgccggtgaacccgcggaccaagctgtgccgctcggccgaagag
atgatcgcgcattaccgcaccatcgaggcggagcgggcgggtctcggctacgacatcgac
ggcgtcgtctacaaagtggacgacctcggcttccagcggcggctcggcttcgtcagccgc
gcgccgcgttgggcgctggcgcacaagttcgcggcgcaggaggcgatcaccgaactcctc
gccatcgacatcaatgtcggccgaaccggctcgctcaacccgctggcgcgcctcaagccc
gtcaccgtcggcggcgtggtggtctcgaacgcgactttgcacaacgagggctacgtccag
ggcgtcggcgccgacggcgagccgatccgcgagggtcgcgacatccgcgtcggcgacacc
gtgatcgtggtgcgcgccggcgacgtcattccaaaggtgcgggatgtggtgatcgacaag
cgcccggccgatgcggtgccctacgtgttccccgacacctgcccggcctgcggcagccgg
gccgtgcgtgaactcaacccgcgtacgaaaaaactcgacgcgatccgccgttgcaccggc
gggctgatctgcccggcgcagggggtcgagcggctgaagcacttcgtctcgcgcaacggc
ttcgacctcgaaggcttcggccagacctatatcgaggtgctgttcgaggccggcctcgtg
aagcagcctgccgacctgttccgactggagttcgagccgctgaaggcggcgatcgtcgcc
cggcgcgaagccctctccgcgcagcgccgtaccgagggcgagccggcgccgaagaagccg
accaagaagaagggtgaggaggaggacaaggcgatcaagaacctgctcgcctcgctcgac
gcccgccggaaaatcccgctcaaccgcttcctgttcgcgctcggcatcccgcagatcggc
gaatcgacggccaaggcgctggccaagcgctttcccgacatgcccgccctgatggcggcc
ctcgcagcggcgacgcgggagcaggcgggccaggactggctcgaactctcggcactgccg
cggatcgggcccggcacccgcgaccgcctgttcgagaccctcgatccgctgcccggcgag
gcgatgcaggatctgagcctcggtgcgcgcctgcgggggcggctgacgccgtcccagcgc
gaggccgtgctcgcccattacggcagcgaggcggaggccgacgcggcgctggagcgggcc
gcctcgcagcggcccggcgatgcctaccggctgttcgccgacgacggcgagatcggcccc
gtggcgacggattcgctgatccagttcttctccgagccgcacaacgacgcggcggtgcgg
gcgctgctcgaagaggtgggaaccgagccgctggccgccccgaccgcctcggcggcggcg
tttgccggcaagacggtggtgttcaccggctccctcgagaagatgacccgcagcgaggcc
aaggccaccgccgagcgcctgggcgccaaagtctccggctcggtctcggccaagaccgac
ctcgtggtcgccggccccggcgccggctcgaagctcaaggacgccgagaagcacggggtg
aaggtggtctcggaggacgattggctggcgatgctggcggaggcgtaa

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