Methylorubrum zatmanii: B2G69_05180
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Entry
B2G69_05180 CDS
T04981
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mza
Methylorubrum zatmanii
Pathway
mza03030
DNA replication
mza03410
Base excision repair
mza03420
Nucleotide excision repair
mza03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mza00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
B2G69_05180
03410 Base excision repair
B2G69_05180
03420 Nucleotide excision repair
B2G69_05180
03430 Mismatch repair
B2G69_05180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mza03032
]
B2G69_05180
03400 DNA repair and recombination proteins [BR:
mza03400
]
B2G69_05180
Enzymes [BR:
mza01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
B2G69_05180
DNA replication proteins [BR:
mza03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
B2G69_05180
DNA repair and recombination proteins [BR:
mza03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
B2G69_05180
NER (nucleotide excision repair)
GGR (global genome repair) factors
B2G69_05180
MMR (mismatch excision repair)
DNA ligase
B2G69_05180
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
B2G69_05180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
Motif
Other DBs
NCBI-ProteinID:
ARO53598
LinkDB
All DBs
Position
complement(1174310..1176757)
Genome browser
AA seq
815 aa
AA seq
DB search
MPSTPLSAAVEDFSEDAAQARHAELSRAIERANQLYYNEDAPELTDAEYDALRQELEAIE
ARFPALTGTTEASAGVGAKPSEKFAKVRHAVPMLSLGNAFADEDVDEFVARVRRFLNLPA
EEAVAFTAEPKIDGLSLSLRYETGRLVTAATRGDGEVGENVTANALTVDDIPERLSGEGI
PEVLEVRGEVYLSHEDFAAINARQEAAGKPLFANPRNAAAGSLRQLDPAITASRPLRFFA
YAWGEVSEPFTDTQSAVLERFRGWGLPVNPRTKLCRSAEEMIAHYRTIEAERAGLGYDID
GVVYKVDDLGFQRRLGFVSRAPRWALAHKFAAQEAITELLAIDINVGRTGSLNPLARLKP
VTVGGVVVSNATLHNEGYVQGVGADGEPIREGRDIRVGDTVIVVRAGDVIPKVRDVVIDK
RPADAVPYVFPDTCPACGSRAVRELNPRTKKLDAIRRCTGGLICPAQGVERLKHFVSRNG
FDLEGFGQTYIEVLFEAGLVKQPADLFRLEFEPLKAAIVARREALSAQRRTEGEPAPKKP
TKKKGEEEDKAIKNLLASLDARRKIPLNRFLFALGIPQIGESTAKALAKRFPDMPALMAA
LAAATREQAGQDWLELSALPRIGPGTRDRLFETLDPLPGEAMQDLSLGARLRGRLTPSQR
EAVLAHYGSEAEADAALERAASQRPGDAYRLFADDGEIGPVATDSLIQFFSEPHNDAAVR
ALLEEVGTEPLAAPTASAAAFAGKTVVFTGSLEKMTRSEAKATAERLGAKVSGSVSAKTD
LVVAGPGAGSKLKDAEKHGVKVVSEDDWLAMLAEA
NT seq
2448 nt
NT seq
+upstream
nt +downstream
nt
atgccgagcacgcccctttccgccgccgtcgaagacttcagcgaggatgccgcccaggca
cgccatgccgagctatcgagggcgatcgagcgggcgaaccagctctactacaacgaggac
gcgcccgaactcacggacgccgaatacgacgccctgcgccaggagctggaggcgatcgaa
gcgcgctttcccgcgctgaccggcaccaccgaggcgagcgcgggcgtcggcgccaagcct
tcggaaaagttcgccaaggtccggcacgcggtgccgatgctctcgctcggcaacgccttc
gccgacgaagacgtggacgagttcgtcgcccgcgtgcgccgcttcctgaacctgccggcc
gaggaggcggtcgccttcaccgccgagccgaagatcgacgggctgtcgctgtcgctgcgt
tacgagacgggccggctcgtcaccgcggcgacgcggggcgacggggaggtcggcgagaac
gtcaccgccaacgcgctgacggtggacgacattccggaaaggctctccggcgagggcatc
cccgaggtgctggaggtgcgcggcgaggtctacctgtcgcacgaggatttcgcggccatc
aacgcgcgccaggaggcggcgggcaagccgctcttcgccaatccgcgcaacgccgcggcc
ggctcgctgcgccagctcgatccggcgatcaccgcctcgcgccccttgcgcttcttcgcc
tatgcctggggcgaggtctccgagcccttcaccgacacgcaatcggcggtgctggagcgg
ttccgcggctggggcctgccggtgaacccgcggaccaagctgtgccgctcggccgaagag
atgatcgcgcattaccgcaccatcgaggcggagcgggcgggtctcggctacgacatcgac
ggcgtcgtctacaaagtggacgacctcggcttccagcggcggctcggcttcgtcagccgc
gcgccgcgttgggcgctggcgcacaagttcgcggcgcaggaggcgatcaccgaactcctc
gccatcgacatcaatgtcggccgaaccggctcgctcaacccgctggcgcgcctcaagccc
gtcaccgtcggcggcgtggtggtctcgaacgcgactttgcacaacgagggctacgtccag
ggcgtcggcgccgacggcgagccgatccgcgagggtcgcgacatccgcgtcggcgacacc
gtgatcgtggtgcgcgccggcgacgtcattccaaaggtgcgggatgtggtgatcgacaag
cgcccggccgatgcggtgccctacgtgttccccgacacctgcccggcctgcggcagccgg
gccgtgcgtgaactcaacccgcgtacgaaaaaactcgacgcgatccgccgttgcaccggc
gggctgatctgcccggcgcagggggtcgagcggctgaagcacttcgtctcgcgcaacggc
ttcgacctcgaaggcttcggccagacctatatcgaggtgctgttcgaggccggcctcgtg
aagcagcctgccgacctgttccgactggagttcgagccgctgaaggcggcgatcgtcgcc
cggcgcgaagccctctccgcgcagcgccgtaccgagggcgagccggcgccgaagaagccg
accaagaagaagggtgaggaggaggacaaggcgatcaagaacctgctcgcctcgctcgac
gcccgccggaaaatcccgctcaaccgcttcctgttcgcgctcggcatcccgcagatcggc
gaatcgacggccaaggcgctggccaagcgctttcccgacatgcccgccctgatggcggcc
ctcgcagcggcgacgcgggagcaggcgggccaggactggctcgaactctcggcactgccg
cggatcgggcccggcacccgcgaccgcctgttcgagaccctcgatccgctgcccggcgag
gcgatgcaggatctgagcctcggtgcgcgcctgcgggggcggctgacgccgtcccagcgc
gaggccgtgctcgcccattacggcagcgaggcggaggccgacgcggcgctggagcgggcc
gcctcgcagcggcccggcgatgcctaccggctgttcgccgacgacggcgagatcggcccc
gtggcgacggattcgctgatccagttcttctccgagccgcacaacgacgcggcggtgcgg
gcgctgctcgaagaggtgggaaccgagccgctggccgccccgaccgcctcggcggcggcg
tttgccggcaagacggtggtgttcaccggctccctcgagaagatgacccgcagcgaggcc
aaggccaccgccgagcgcctgggcgccaaagtctccggctcggtctcggccaagaccgac
ctcgtggtcgccggccccggcgccggctcgaagctcaaggacgccgagaagcacggggtg
aaggtggtctcggaggacgattggctggcgatgctggcggaggcgtaa
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