Nocardiopsis alba: B005_1338
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Entry
B005_1338 CDS
T02218
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
nal
Nocardiopsis alba
Brite
KEGG Orthology (KO) [BR:
nal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nal03016
]
B005_1338
Enzymes [BR:
nal01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
B005_1338
Transfer RNA biogenesis [BR:
nal03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
B005_1338
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GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
Motif
Other DBs
NCBI-ProteinID:
AFR08655
UniProt:
J7LB88
LinkDB
All DBs
Position
complement(1392798..1393346)
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AA seq
182 aa
AA seq
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MRSFVALWPSPEVVETLDRAVRHVRRRVPEAKWTRREEWHLTLLFLGEVDGALMPGLLEA
LDRVLDGYPPLDLSLDGWGVFPLSAPRASVVWAGVTGEHLIGLVDGLREAARSAGVRVES
RPFVPHLTLARARPPLVTERILRTLGPPPRAGWRSDRIDLVESRRVGESRYRAVRSWETS
GR
NT seq
549 nt
NT seq
+upstream
nt +downstream
nt
atgaggtcgttcgtcgcgctgtggccctccccggaggtcgtcgagaccctggaccgcgcg
gtgcggcacgtccgacggcgggtgccggaggccaagtggaccagacgggaggaatggcac
ctcaccctgctcttcctcggcgaggtggacggcgccctcatgcccggcctcctcgaggcc
ctcgaccgcgtcctcgacgggtatccacccctcgacctctcccttgacggctggggggtc
ttccccttgagcgccccgcgtgcctccgtggtctgggcgggggtgaccggggagcacctc
atcgggctggtggacgggctacgggaggcggcccgatcggccggggtccgcgtcgagtca
cggcccttcgttccccacctgaccctggcccgcgcccgcccgcccctggtcaccgagcgg
atcctgcgcacactgggcccgccgccccgggccggttggcgctccgaccggatcgacctc
gtcgagagccgccgtgtgggggagagccgctaccgcgccgtccgctcctgggagacgtcc
ggacggtaa
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