Nautilia sp. PV-1: C3L23_07780
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Entry
C3L23_07780 CDS
T05986
Name
(GenBank) hypothetical protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
nap
Nautilia sp. PV-1
Pathway
nap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C3L23_07780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nap03019
]
C3L23_07780
03400 DNA repair and recombination proteins [BR:
nap03400
]
C3L23_07780
Enzymes [BR:
nap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C3L23_07780
Messenger RNA biogenesis [BR:
nap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C3L23_07780
DNA repair and recombination proteins [BR:
nap03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
C3L23_07780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrD-helicase
Helicase_C
AAA_19
UvrD_C
UvrD_C_2
Viral_helicase1
AAA_12
AAA_30
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AZV47175
UniProt:
A0A3T0L3I1
LinkDB
All DBs
Position
complement(1466652..1471658)
Genome browser
AA seq
1668 aa
AA seq
DB search
MKLLDIGEADYKQITNLIKNNYFVYKKDWKFIDYDDMDNYNLPSQKYWLEEDINNIKNTS
KRHLVIKCKNFENFGISEKELIQYIKIAMDFKLIFIDIDTINDEKIVATQPGGNLFTING
FQEFILNNESINFICGHNIINYDVPVLLSYSFYYKKVNFTKNFQNALRKKNFIDTLYLSI
LFSKKSSLSLDKEYKREEKQNNPLKDAKESLQLFVELCETFKTLPKELKHTLFYFLKDNE
YYKGFFKYTGLDLVKIDEKVVFEIINNYFENIDKEYILRNSFEIAIILMSKYLKKPVPPF
AYKNIENLYKVEKKLVLKKIKSLKNYVQNLLECNEFEFRKFKPLEKNIFENREISQEDII
NTALNNKNILAILPTGGGKSLCYQIPAIFEAENFQRLTLVISPLRSLMRDQIEGFNKKYN
TSVKAGALSGFLSPSERKKLIEDVENGIVNLLYIAPESLRFKTIRGILKKRDLSRVVIDE
AHCISMWGHDFRPDYRYIADFLKEIYNEEIPPISLFSATASKEVIKDIKDYFYDKLNIRF
EEFIADNKRNNLIYKVIKINAENKKDIFEEKYKELLKLVKPKQIIYIPNSIKDCDEVAQR
LNIESGLRVESFHSKKENREEILQNFLDNHIDIIVSTTAFGMGVDKPDIESVIHFTPSQN
IEDYMQESGRAGRDKKLVPQAECISLYYEGDFDKYLHRLKSSIITREEIQAVYQAIKDYK
KDKIYITPVELALKSKLNIDIDSEEYKQRLNDIITELTEEGLIERESNNYNIYATAIEIT
DIVKVRKLLDVGSKEINLAFEIYNLIKKKSRKTLDIAEAAFLLGRNEKEIIEAVKELKDK
EIISEEVDIHFKINKPVQWLYFALERFLIENITNGEEILKLREIAENFKQSEDKRFQKYN
KQNNKKIIEILERILNNWKEYTEIKRLDKKLSLWKLKTQNIDKFKEKINNRLNYSYRIYK
KILENKTTVKFSDIKKEFPNLKEKEINDYLVFLHYAKAITLIDGVFIYYPQYILKVKKHI
NQYTNEMYEKRKKPYYENKRKKIHIMNEFLIRQTNSNTSEFLKNYFLMPIDDFIKKHIKF
VKQYIGYFITKTKHKQIFESLTDEQKEIVNSKKRQMLVLAGPGSGKTKTLVNKIANLILN
NEKVNPELFLMLTYTRTAMIEFKDRLYDLIGNDVYKLDIHTFHSYLYYILGENSKNISTQ
KDNNYIFDKFLCLEPEIKKEIIPVKSVLYLDEYQDITPKTFEIVKEIIKYSGIREIVAVG
DDDQMIMDFTGSSVKFFDDFWELLDTKEKVSFSLSKNFRSTENIVEYSNEFIKKIKSRKK
RTDIVPVKKEKGIIEIIKFFSPNLYEPVVAKIMDIGIEREIAILTHSNDTALTLKSLLNK
YNIKSKLILDKQKFKWSDLFEIKEFDNAIIENLQEEKILTEEILNKALARISHLSFSRNF
HYVYELISYVKNKESFTYEAWKALIDDLDDEFFKSSTSRITISTIHKAKGKEFENVIIMD
ENNKYNENLDENLIRKYYVAVTRAKKSLFIYTNHNYFYNKFIENNKHIYKTDNNSYLKPE
EIILELGLGDIHLGESFDCQEELKKVYLSNSPLFLKGNKIFSHNFITQLSESKPDKGINK
IKIKLNQGYKIKNINLVNLVYYFTENYNTHEKKEILQGVFNIILIKVD
NT seq
5007 nt
NT seq
+upstream
nt +downstream
nt
ttgaaattattggatattggagaggccgattataaacaaataacaaacttaatcaaaaac
aattactttgtttataaaaaagactggaaatttatagattacgatgatatggataattac
aacctgccctctcaaaaatactggcttgaagaagacataaataatatcaaaaacacttca
aaaagacatcttgttattaaatgcaaaaattttgaaaattttggaataagtgaaaaagaa
ttaattcagtatattaaaatagcaatggattttaaattgatttttatagatattgacaca
ataaacgatgaaaaaatagtggcaactcaaccaggcggtaatttatttacaataaacgga
tttcaggaatttattttaaataatgaaagtattaattttatatgcggacataatattata
aattatgatgtccctgttttgttgagttattctttttattataaaaaagtaaattttaca
aaaaattttcagaacgcattaaggaagaaaaatttcattgacacattgtatttatcaatt
ttgtttagtaaaaaatcgtctctttcgctggataaggaatataaacgcgaagaaaaacaa
aacaaccctttaaaagacgcaaaagaatcacttcaattgtttgtagaattatgcgaaacc
tttaaaacattacccaaagaattgaagcacactcttttttattttctcaaagataatgaa
tattataaaggatttttcaagtataccggattggatttggtaaaaattgatgaaaaagtg
gtttttgagataatcaataattattttgaaaatatagacaaagagtatatattaagaaat
tcatttgaaattgcaattattttaatgtcaaaatacctaaaaaagcctgtgccgcctttt
gcatacaaaaatattgaaaatttatataaagttgaaaaaaaattggtattaaaaaaaata
aaatctttaaaaaactatgtccagaatctacttgagtgtaatgaatttgaatttagaaaa
ttcaaacctcttgaaaaaaacatttttgaaaacagggaaatttcccaggaagatattata
aacacggcattaaacaataaaaatattctcgcaattttacccacaggaggaggaaaaagc
ctttgttatcagataccggctatatttgaagccgaaaattttcaaagacttacacttgtc
atctctccactacggtcattaatgagagaccagatagaaggatttaataaaaaatacaat
acatccgtaaaagccggagcattaagcggatttttatctccaagtgaaagaaaaaagctt
atcgaggatgtggaaaatggtattgtgaatttgttgtatattgcgcccgaatccttgcgt
tttaagacaataagaggtattttaaaaaaaagagatttatcaagggttgtaatagacgaa
gcacattgtatatcaatgtggggacacgatttcagacctgattacagatatatagccgat
tttttaaaagaaatatataatgaagaaataccacctatttcattatttagtgcaaccgct
tcaaaggaagttattaaagatattaaagattatttttatgataaattaaatatcagattt
gaagaatttatagccgataacaaaagaaataatttaatttataaagttataaaaatcaat
gctgaaaataaaaaagatatttttgaggaaaaatataaagaacttttaaagttggtgaaa
cctaaacaaattatttatattccaaacagtattaaggattgcgatgaagtagcacaaaga
ttaaatattgaaagcggtttaagagttgagagtttccattcaaaaaaagaaaacagagaa
gaaattttgcaaaattttcttgacaatcatatagatattatagtttcaaccacggctttt
ggtatgggagttgataagcctgatattgaaagtgtaattcattttaccccgtcacaaaac
atagaagattatatgcaggaatccggaagagccggaagggataaaaaacttgtacctcaa
gccgaatgtatcagtttgtattatgagggagacttcgacaaatatttgcatagattaaaa
agctcaattattacaagagaagaaattcaagctgtttatcaggctataaaagactataaa
aaagacaaaatatacataactcccgtagaacttgccttaaaatcaaaattaaatatagat
atagattccgaagaatataaacaaagacttaacgacattattacagaactgacagaagaa
ggtttaattgaaagagaaagcaacaactacaatatttatgcaacagcgatagaaataacc
gatattgtaaaggtaagaaaattactggatgttggtagcaaagaaatcaatcttgctttt
gaaatttataacctaataaagaaaaaatcaagaaaaacgcttgacatagccgaagccgca
tttttattaggcagaaacgaaaaagaaattattgaagccgtaaaagagttaaaagataaa
gagataataagtgaagaagtggatatccattttaaaattaacaaaccggttcagtggctc
tattttgctttggagagatttttaatagaaaatataacaaacggtgaagaaattttaaaa
ctgcgcgaaattgctgaaaattttaaacaaagcgaagacaaaagatttcaaaaatacaat
aaacaaaacaataagaaaatcatagaaatattagagagaattttaaacaactggaaagaa
tataccgaaattaaaagacttgataagaaacttagtttatggaaattaaaaacacaaaat
attgataaatttaaagaaaaaatcaataacagacttaattattcgtatagaatttacaaa
aaaatattagaaaacaaaacaaccgtcaaattttctgacataaaaaaagaatttccgaat
ttgaaagaaaaagaaattaatgattatcttgtttttttgcattatgcaaaagctataaca
ctaatagacggtgtttttatttattatcctcaatatattttaaaagtaaaaaaacacata
aaccaatacacaaatgaaatgtatgaaaaaagaaaaaaaccgtattatgaaaacaaaaga
aaaaaaatacatatcatgaacgaatttttaataagacagacaaattcaaacacttccgaa
tttctaaaaaattattttttaatgcctatagatgattttattaaaaaacacattaaattt
gtaaaacaatatattggatatttcattaccaaaacaaagcataaacagatttttgaaagt
ttaaccgatgaacaaaaagaaattgtaaacagcaaaaaaaggcaaatgcttgtattggca
ggtcctggaagcggaaagacaaaaacgcttgtaaataaaattgctaatcttattttaaat
aacgaaaaagtaaatccggaactgtttttaatgctgacttataccagaaccgcaatgatt
gagtttaaagacaggctatatgatttgataggaaatgatgtatataaactggatattcat
acgtttcattcttatttatattatattctcggagaaaacagtaaaaatataagtactcaa
aaagacaataattatatatttgataaatttttgtgcttggaacctgagataaaaaaagaa
ataattcctgtaaaatcggtgttgtatttagacgaataccaggatattacccctaaaacg
tttgaaattgttaaagagataattaaatattcgggaataagagaaatagttgctgttggt
gacgacgaccagatgataatggattttacaggttcatcagttaagttttttgatgatttt
tgggagcttttggatacaaaagaaaaggtgagtttcagtttaagtaaaaatttcagaagt
acagagaatatagtcgaatattccaatgaatttataaaaaagataaaatccagaaaaaaa
agaacggatatagtgcctgtaaaaaaagaaaaaggaattatagagataatcaaatttttt
tcaccaaatctctatgaaccggtagttgcaaaaataatggacataggaattgaacgggaa
attgcaatattaacacacagcaacgacactgccttgacactaaagtctcttttaaacaaa
tacaacattaaatctaaacttatacttgataaacaaaaattcaagtggagcgatttgttt
gaaattaaggaatttgacaatgcaataatagaaaatcttcaagaagagaaaatacttaca
gaagaaatattaaacaaagcattagcgagaatttcacacctttccttttcaagaaatttc
cattatgtttatgaactgatttcatatgtaaaaaataaagaaagttttacttatgaggct
tggaaagctcttattgatgatttggacgatgaattttttaaatcctctacttcaagaatc
acaatcagcaccatccataaagcaaaaggcaaagagtttgaaaatgtaataattatggat
gaaaacaacaaatataatgaaaatttagatgaaaatttaataagaaaatattacgtggca
gtaacaagggcaaaaaaaagtttgtttatttatacaaatcataattatttttataataaa
tttattgaaaataataaacatatatataaaactgacaataattcctatttgaaacctgaa
gaaataattttagaattaggtttaggtgatatacatttgggggaatcatttgattgtcaa
gaagaattaaaaaaagtttatttgtccaattcccctttgtttttgaaaggaaataaaatt
ttttcgcacaattttatcacacaattatcagaatctaaaccagataaaggaataaataaa
ataaaaataaaattaaatcaaggatataaaataaaaaatataaatctggttaatttagta
tattattttacagaaaattataatactcatgaaaaaaaagagattcttcaaggggttttc
aatattattttgattaaagtagattag
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