Novosphingobium aromaticivorans: Saro_1982
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Entry
Saro_1982 CDS
T00322
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nar
Novosphingobium aromaticivorans
Pathway
nar03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Saro_1982
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nar03400
]
Saro_1982
Enzymes [BR:
nar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Saro_1982
DNA repair and recombination proteins [BR:
nar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Saro_1982
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
UB2H
AAA_16
RecG_dom3_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
ABD26422
UniProt:
Q2G6V1
LinkDB
All DBs
Position
2099682..2103176
Genome browser
AA seq
1164 aa
AA seq
DB search
MSDLDRILSAKSPLTLSSVARGAQPLVLADLARAARGRTVFIAPDEAAMRAIVDSAAYFA
PDLDVIDFPAWDCLPFDRASPALSVSARRLAALQKLQHTRSGPQLLVTTINAALQRVLTP
FRIRESTRLLTPGTEIGRESLIALLQRQGYSRTDTVVDAGEYAVRGSVFDIFPSGLDHGL
RLDFFGDELETLRLFDPNTQRSVQPVETHLLLPASEALLDEDSIKRFRSRYREMFGANAT
GDPLYQAISDGRRLAGMEHWLPLFEDRVVTLFDHLGENDLVLIDTTAIKAAEQRIADIAD
YHQSRLDSSSKAPGSYRPLSESALYLTRDELDRALAGWPVHRTTIFAEPESKHVIDFGFA
SSHDFTPERAAAGSGGGNIYEAAAKYISALGTRGKKPIIAAYTSGSRSRLASLLAEAGKF
TPQIAENWQQALGLAASGKPVAIVLPLEQGFANDDLELLTEQDILGDRLVRRKRKRKDAD
AFLAELSALTPGDLVVHMDHGIGRYIGLEAVAVGASPHDCVQLEYAGGDKLYIPVENLDV
LSRYGSDAEGVSLDKLGGEAWQRRKARMRERILEMAGQLMATAAHRALRQGLVLPVDPAS
YGPFIDRFPWDETEDQERAIDDVLGDMAEGKPMDRLVCGDVGFGKTEVALRAAFVAAMQG
VQVAVVAPTTLLARQHYANFVERFNGFPLQIGRLSRLVPAKEASETRAGLADGRVDIVIG
THALLSKSVEFKRLGLVIVDEEQRFGVTHKEKLKELKADVHVLTLTATPIPRTLQMAMSG
LRELSTIQTPPVDRLATRTYVMPWDDMVMREALLREHQRGGQSFIVVPRIADMPELEEWL
RLNVPEVRFVTAHGQMSPTEVEDRMGAFYEKKYEVLLSTTIVESGIDIPSANTIVIHRAD
RFGLAQLYQLRGRVGRGKIRAYAYLTVPEDMALSEVAEKRLKVLGDLDSLGAGFQLASHD
LDIRGAGNLLGDEQSGHIKEVGFELYQSMLEDAILAAKAGDIGLAREREALSPQITLDAP
IMIPEDYVPDLAVRMALYRRMNDADGPDAVEALAAEMIDRFGPLPAPTQNLLRLIEVKRQ
AIAANIAKIDVGPKGALVSFHKDTFPDPVGLIGYVERLNGVAKLRPDNKLVIQRAWGTAE
GRLNGLVQLTKGLSAIARRARKAA
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatctcgaccgcatcctgtcggccaagtcgccgctaaccctgtcgtccgtagca
cgcggcgcgcagccgctcgtgctcgccgaccttgctcgcgctgcgcgcggccgcaccgta
ttcatcgcgcccgacgaggccgccatgcgcgccattgtcgacagcgcggcatacttcgcc
ccggacctcgacgtcatagactttccggcatgggactgcctgccgttcgaccgcgcttcg
ccggcgctttccgtcagcgcccgccgtctggccgcattgcagaagctgcagcacacgcgt
tccggcccccagcttctcgtcacgacgatcaatgccgcgctccagcgcgtactcacgccc
ttccgcatccgcgaatccacacgcctgctcacgcccggcaccgaaatcggccgggaaagc
ctgatcgctctcctccagcgacagggctattcgcgcactgacaccgtcgtcgatgcgggc
gaatacgcagtgcgcggttcggtcttcgacatctttccgtcaggcctcgaccacggcctc
aggctcgacttcttcggagacgaactggaaaccctgcgcctgttcgatccgaacacccaa
cgctcggtgcagccggtagaaacgcatcttctgctcccggcaagcgaagccctgctcgat
gaagacagcatcaagcgcttccgcagtcgctatcgcgaaatgttcggcgcgaacgccact
ggcgacccgctgtatcaggcaatcagcgatggccgccgccttgccggaatggaacactgg
ctgccgctgttcgaggacagggtcgtcacgctcttcgatcaccttggcgagaacgatctc
gtcctgatcgacacgaccgcgatcaaggcggccgagcagcgcatcgcggacatcgcggac
tatcatcagtcgcgtctggattcgtcgtccaaggcgccggggagctatcgcccgctctcg
gaaagcgccctgtaccttacgcgtgacgaactggatcgcgccctggcgggctggcccgtc
caccgcaccacgatctttgccgagccggaatcgaagcacgtcatcgatttcggctttgcg
tccagtcacgatttcacccccgaacgcgcggcggcgggaagtggcggcgggaacatctac
gaagcagccgccaaatacatctcggcgctcggcacgcgcggcaagaagccgatcattgcc
gcttatacctcggggtcgcgttcgcgccttgcctcgcttctggccgaggcaggcaagttc
acgcctcagatagcagagaactggcagcaggcactgggccttgccgcatcgggcaagccg
gtcgccatcgtcctgccgctcgaacagggcttcgccaacgacgacctcgaactgcttacc
gagcaggacatcctgggcgaccgcctcgtccgcaggaaaaggaagcgcaaggacgccgat
gccttcctggccgagctttccgcgcttaccccgggcgatctggtggtccacatggatcac
ggcatcgggcgctacatcgggctggaagccgtcgccgtcggcgcttctccccatgactgc
gtccagctcgaatacgccggtggcgacaagctctacatccccgtcgagaatctcgacgta
ctctctcgctacggctcggacgccgagggcgtgtcgctcgacaagctcggcggcgaggca
tggcagcgccgcaaggcgcgcatgcgcgagcgcatcctcgagatggccggccagctcatg
gcaacggccgcgcatcgcgcccttcgacagggtctggtcctgccggtcgaccccgccagc
tacggccccttcatcgaccgcttcccctgggacgaaacggaagaccaggagcgcgccatc
gacgacgtcctcggagacatggccgagggcaagccgatggatcgtctggtctgcggcgat
gtcggcttcggcaagaccgaggttgccctccgcgctgcgtttgtcgcggcgatgcaaggc
gttcaggtggccgtggttgcgccaactaccctgctcgcgcggcagcactacgcgaacttc
gtcgaacgtttcaacggcttccccctccagatcggccgcctctcacgcctcgtgccggcc
aaggaagccagcgaaacgagggccgggcttgcagatgggcgagtcgatatcgtcatcggc
acacacgcgctgctgtcgaagtcggtcgagttcaagcgcctgggccttgtcatcgtggac
gaggaacagcgctttggcgtgacccacaaggagaagctcaaggaactgaaggcggacgtc
cacgtcctgactctcacagccactccgattccgcgcacgctgcagatggcgatgtccggg
ctacgcgagctttcgacgatccagaccccgccggtcgatcgcctcgccacgcgcacctac
gtcatgccgtgggacgacatggtcatgcgcgaagccctcctgcgcgaacaccagcgcggc
gggcagagtttcatcgtcgtgccgcgcattgccgacatgccggaactcgaggaatggctc
cggctcaatgtccccgaagttcgcttcgtcaccgcgcacggccagatgagcccgaccgaa
gtcgaggaccgcatgggcgctttctacgagaaaaagtacgaagtgctgctgtccaccacc
atcgtggaaagcggcatcgacattccttcggccaacaccatcgtcatccaccgcgccgac
cgcttcgggctcgcccagctctaccagcttcgcgggcgcgtcggtcgcggcaaaatccgc
gcctacgcctatcttaccgtgcccgaggacatggccctgtccgaagtcgcggaaaagcgc
ctcaaggtgctcggcgacctcgacagcctcggcgccggcttccagctcgccagccatgat
ctcgacattcgcggcgccggcaacctgctgggcgacgagcagtcgggccatatcaaggaa
gtcggcttcgaactctaccagtcgatgctcgaggacgcgatcctcgccgccaaggcaggc
gacatcggccttgcccgcgagcgcgaggccttgagcccgcaaattaccctcgacgcccct
atcatgatccccgaggactacgttcccgacctcgccgtgcgcatggcgctctaccgccgc
atgaacgacgccgacggaccggatgcggtcgaggcattggccgccgagatgatcgaccgc
ttcggccccctgcccgcgcccacgcagaacctgctgcgcctgatcgaagtaaagcgccag
gccatcgcggcaaacatcgccaagatcgacgtgggccccaagggcgcgctggtcagcttc
cacaaggacaccttccccgacccggtcggcctcatcggctatgtcgagcgcctgaacggc
gtcgccaagctgcgcccggacaacaagctcgtcatccagcgtgcatggggaacggcggag
ggacggctcaacggcctcgtgcagctcaccaagggcctctcggcgatcgcccgtcgtgcc
aggaaagcggcctag
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