KEGG   Nicotiana attenuata: 109243790Help
Entry
109243790         CDS       T05870                                 

Definition
(RefSeq) DNA ligase 6-like isoform X1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
nau  Nicotiana attenuata
Pathway
nau03030  DNA replication
nau03410  Base excision repair
nau03420  Nucleotide excision repair
nau03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:nau00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    109243790
   03410 Base excision repair
    109243790
   03420 Nucleotide excision repair
    109243790
   03430 Mismatch repair
    109243790
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:nau03032]
    109243790
   03400 DNA repair and recombination proteins [BR:nau03400]
    109243790
Enzymes [BR:nau01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     109243790
    6.5.1.6  DNA ligase (ATP or NAD+)
     109243790
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     109243790
DNA replication proteins [BR:nau03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    109243790
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     109243790
DNA repair and recombination proteins [BR:nau03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     109243790
   NER (nucleotide excision repair)
    Other NER factors
     109243790
   MMR (mismatch excision repair)
    Other MMR factors
     109243790
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DRMBL DNA_ligase_A_C RMMBL
Motif
Other DBs
NCBI-GeneID: 109243790
NCBI-ProteinID: XP_019266326
UniProt: A0A1J6J6Q3
LinkDB All DBs
Position
2
AA seq 1422 aa AA seqDB search
MSSEAGTLTLDSTTLYPTALNSLPGQSSSHSNPPPLPLPPIPPSVPQPKLIPKTRFIIDG
FKYAGDFSVSYFLSHFHSDHYTGLSPNWSKGIIFCSSITANLLIQVLNVPAQFVVSLPLS
EAVLIDGSEVFLSDANHCPGAVQFLFKIPVNYGKFERYIHTGDFRYCDKMKLEPVLNAFI
GADAVFLDTTYCNPKFIFPSQDESIDYIVGVIEKYGAENEGSLKNILFLIATYVIGKEKI
LVEVARRCKRKIHVDGRKIAVLKVLGHGEDGVFTTFESETDVHVVGWNVLGETWPYFRPN
FVKMNEIMNEKGYSKVVGFVPTGWTYEVKRSKFSVRKKDSFEIHLVPYSEHSNYDELRQY
VKFLKPKRVIPTVGIDVEKLDSKHANAMQKHFAGLVDEMAIKQEFLMGFHPCVQGEEDMD
AKESPHASVSITNQENTGESAHALVSITKQENEDTSLDSKICNNGDREDIIHSFPQGEPE
LQGLEKISEGDVEEDLKELKDCLPIWVTKDQMLDLLSISGKNIVDAVTNFYEHETEYRER
VTVSNSPTSSFEPNSLNGSALPFKPKGDEYMLSPKPWVGKSPQQGETTASNKTFKLPNMN
RSSCKTITPGKRKRSAENKSLKKARGNVSMEPGGSKQCTITKFFSKMAPPSATTSRNSHD
DNSMLLSASVESYIEEADRFIQIVNRDESLRSYAATVLAKTKGDISMALDIYFSEHKDVG
ETNGCGISESSKVVQPAKEVFPSSKDEKLPKKLGDDPDLSLSGIPLANTAVNYVSLPPEK
YSPLEHASWSKGQAAPYLHISRTFELVEEEKGKIRATSMLCNMFRSLLALSPEDVLPAVY
LCTNKIAPDHENMELNIGGSTVIAALEEACGTKRSKVRELYNSLGDLGDVAQLCRQTQSL
LAPPVALSIRGVYSILRRISLQAGSGSGVRKKSLIVNLMCSCREKEMKFLVRTLVRNLRI
GAMMRTVLPALAQAIVFNSVLYDGPVENMKENLQRLSAEVVEAYNILPSLDVLVPSLMEK
GIAFSSNTLSMDPGIPIKPMLAKITNGAPQVLKLFQNKAFTCEYKYDGQRAQIHKLADGS
VRVFSRNGDETTSRFPDLVNIITESCGPRGATFIVDAEVVAIDRKNGSKLMSFQELSSRE
RGTKDSIITLDKIKVEICIFVFDMMFANGKQLLHLPLRQRRKYLKDLFGDGKVGYFEYAT
EMTVESDDACADNEATLARMNSFLDDALRSSCEGIMVKSLDIDAGYTPSKRTDAWLKVKR
DYVEGLSDSLDLVPIGAWYGNGRKAGWYSPFLMACYNPDTEEFQSVCRVMSGFSDSFYIE
MEEFFSGDKIFNKKPHYYRTAEVADMWFSPEVVWEIRGADFTVSPVHHAAIGSVHPSRGI
SVRFPRFIRCLSDRKPEECSTSADIADMFRSQTRKMDVNVEH
NT seq 4269 nt NT seq  +upstreamnt  +downstreamnt
atgtcatccgaagccggaaccctaacccttgactctaccactctctacccaaccgctctc
aactccctccccggccaatcttcctcacattcaaatccaccacccctccctcttccccct
atccctccctcagtccctcaaccgaaactgattccaaaaactcgctttatcatcgacggt
ttcaaatatgccggcgatttctcagtttcatacttcctctctcatttccactccgatcac
tatactggcctttcccctaattggtccaaaggtatcatcttttgctcctccataaccgct
aaccttctcatccaagtcctcaatgttcccgcgcaatttgtagtgtctttaccgctttcc
gaagccgttttaatagacggctccgaggtatttctcagcgatgccaatcattgtcctggt
gctgtgcaatttttatttaaaattccagttaattatggcaaatttgagcggtatattcac
acaggtgattttcgttattgtgacaaaatgaaattagagcccgttttaaatgcatttatt
ggtgctgatgctgtatttttagatacaacttactgtaatccgaaatttatattccctagt
caagatgagtcaattgattatatagttggtgttatagagaaatatggagctgagaatgag
ggctcattgaaaaatatattgtttcttattgctacttatgttattgggaaggagaagatt
ttagtggaggttgcacggagatgtaagagaaagatccacgttgatggcaggaagatagca
gttttgaaggtattaggtcatggggaggatggggtgtttactacctttgaatctgaaact
gatgttcatgttgttgggtggaatgtgttgggtgagacttggccatatttcagacccaat
tttgtgaaaatgaacgagatcatgaatgagaaagggtattctaaggtggttggttttgtc
ccaaccggctggacttatgaagtgaagcgaagtaaattttcagtgaggaagaaagattcc
tttgagatacatcttgttccatatagtgaacattctaattacgatgagcttagacaatat
gtaaagtttctgaaaccaaagcgcgtcataccaacagtaggcatagatgttgagaagctg
gatagcaaacatgctaatgccatgcagaagcattttgctggcttggttgatgagatggcc
attaagcaagaatttctgatgggttttcatccttgtgtccaaggggaggaagatatggat
gcaaaagaatctcctcatgcttcagttagtatcaccaatcaagaaaacacaggcgaatct
gctcatgctttagtcagtatcaccaagcaagaaaatgaggatacttcattggattctaag
atctgcaataatggtgatagggaggatattatccattcatttcctcaaggagaacctgag
ttgcaaggtttagaaaaaataagtgaaggtgatgtggaagaagatctgaaagaacttaaa
gactgtttacccatttgggtcactaaagaccagatgttggatttacttagtatttcgggg
aaaaatattgttgatgcagtcactaacttctatgaacatgaaaccgaataccgcgaacgg
gtcactgtcagtaattctcctacctcttcctttgagccaaactcactaaatgggtctgca
ttgccttttaaaccaaaaggagatgaatatatgctgtctcccaaaccatgggttggtaaa
agcccgcagcagggtgaaacaactgcatcaaataaaacctttaaactgcccaacatgaac
cgttccagttgcaaaactattactccgggtaaaaggaagagaagtgctgaaaacaagtcg
cttaaaaaagcaagaggaaatgtaagtatggaacctggtggatcgaagcagtgtactata
acaaagttcttcagtaaaatggctcctccatctgcaactactagtagaaattcccacgat
gataacagtatgctactaagtgcctccgttgagtcttatatagaggaagctgatcggttt
attcagatcgtgaatagggatgagtcattaagaagttatgctgccacagtactagcaaag
actaaaggagacataagtatggcacttgatatttatttttcagaacacaaagatgttgga
gaaactaatggatgcgggatttctgaaagcagcaaagtggtgcaacctgctaaagaggtt
ttcccttcttccaaagatgagaagttgcccaaaaaattaggagatgacccggatttgtcc
ttgtctggaattcccttagcaaatactgctgtaaattatgtatcacttccacctgagaaa
tattctcctttggaacatgctagctggagcaaggggcaggctgctccatacctacatatt
tcacggacttttgaattggtagaggaagaaaaaggcaagataagagcaacatcaatgtta
tgcaatatgtttcggagcttgctggcattgtctcctgaggatgtgcttcctgcagtgtac
ttgtgcacaaacaagatagctcctgaccatgaaaatatggaattgaatattgggggcagt
actgttatagcagcactagaggaggcatgcgggacaaagagatcgaaagtacgagaacta
tataacagcctaggtgatcttggtgatgttgctcaactttgccgacaaacacaatcgtta
cttgctcctccagtggcactttcaattaggggtgtatactctattcttagaaggataagt
ttacaggcaggtagtgggagtggcgtccgaaagaaaagcctcattgtcaatctcatgtgt
tcatgtagggagaaggagatgaagtttcttgtcagaactttggttaggaatttgcggatt
ggagccatgatgagaactgttcttcctgcattagctcaagctattgtcttcaattctgtt
ctttatgatggaccagtcgaaaacatgaaagagaatctgcagcgactttcagcagaagta
gttgaagcatataacatccttcccagcttggatgtacttgttccttctttgatggaaaag
gggattgcgttttcctcaaatacgttgtcaatggatcccggcatacccatcaaaccaatg
cttgcaaaaattactaatggcgcccctcaagtgctgaagctcttccagaacaaagccttt
acatgcgagtacaaatatgatggtcagcgagctcaaattcataaattagctgatggttcg
gtccgtgtattttcacggaatggggatgaaacaacatctaggttccctgatttggtaaac
ataattacagaatcatgtggtcccagaggagcgacattcatagtggatgcagaggttgtt
gcaattgatagaaaaaatggttcaaagctcatgtcgttccaagaactatcttcgcgagag
agagggaccaaagattccatcatcacattagataaaattaaggttgagatatgcattttt
gtcttcgatatgatgtttgcaaatggaaaacaattgttgcatctgccactccgtcaaagg
cgaaaatacctgaaggatttatttggtgacggcaaagtgggttatttcgagtatgcgaca
gaaatgactgtagagtctgatgatgcttgtgcggataacgaagccacattggctaggatg
aacagctttcttgatgatgcgctacgttcttcttgtgaaggaatcatggtgaaatccctt
gatatagatgctgggtacacaccatcaaagcgcactgatgcatggttaaaggtcaagaga
gactacgtggaaggactaagtgattccttggacttggttccgattggtgcttggtatggg
aatggaaggaaagcgggatggtatagtcctttccttatggcctgctacaaccctgacact
gaggaattccagagtgtctgccgggtcatgtctgggttttctgattcattctacatagag
atggaggagttcttctctggggacaaaatcttcaacaaaaagccacattactatcgaact
gcagaagtggctgatatgtggttttctccagaagttgtgtgggagataaggggtgcggac
ttcacggtgtcaccagtgcatcatgcagccattggttcagtccatccatctcgtggtatc
tctgtcagattccctaggttcattcggtgtttgtcagatagaaaacctgaggaatgtagc
acatctgcagatatagccgacatgttccgctctcagactagaaaaatggatgtgaatgtt
gaacattga

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