KEGG   Nocardia brasiliensis: O3I_020445Help
Entry
O3I_020445        CDS       T02270                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
nbr  Nocardia brasiliensis
Pathway
nbr03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:nbr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    O3I_020445
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:nbr03400]
    O3I_020445
Enzymes [BR:nbr01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     O3I_020445
DNA repair and recombination proteins [BR:nbr03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     O3I_020445
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID: AFU02048
UniProt: K0EQJ0
LinkDB All DBs
Position
complement(4629267..4630223)
Genome map
AA seq 318 aa AA seqDB search
MPAPMLAVSGRPPVDLGRWAIEMKWDGIRAVTVTRDRQCRFYSRNNRDISASFPELTAAF
TELLGDRELVLDGEIVAPEPSTGAPSFRRLQRRMHVLNPGAELLREVPVQYLIFDLLDDG
TALTSLPYTERRARLDELALDAKLIRTPPYYTDVDAGTMLGIAREHGLEGIVAKRLDSTY
QPGRRAPVWIKTPLRRTTEIVVAGWLPGSGRFTGIFGSIVMGAYDDADRLVHVGNVGTGW
TMRDRRALQARLNEITRPEPPFDVPPPRQVANAAHWVAPELVADIEFREVSSDGLRHPSW
RGLRPDRDPREAKVPSPD
NT seq 957 nt NT seq  +upstreamnt  +downstreamnt
gtgccggcgccgatgctggccgtctccggacggccaccggtcgatctcggccgctgggcg
atcgaaatgaaatgggacgggatccgcgcggtcaccgtcacgcgggatcggcaatgccgc
ttctacagccgcaacaatcgcgatatcagcgcgtctttcccggaactgaccgccgcgttc
accgaattgctcggcgaccgcgaactcgtcctcgacggcgagatcgtcgcaccggaaccg
agtaccggggcgccctcgttccgtcggctacagcgacgcatgcacgtgctgaaccccggg
gccgaattgctgcgtgaggttcccgtgcagtacctgatattcgatctgctcgacgacggg
accgcgctcacgtcgctgccgtataccgagcgccgcgcgcgcctcgacgaattggcactc
gacgcgaaattgatccgcacgccgccctattacaccgatgtcgacgccggcaccatgctc
ggtatcgcacgcgaacacggcctcgaaggcatcgtcgcgaaacgcctcgactccacctat
cagcccggtcgacgggcgccggtgtggatcaagaccccgctgcggcgcaccacggagatc
gtcgtggcggggtggctgcccggcagcggacgcttcaccgggatcttcggttcgatcgtg
atgggggcctacgacgacgcggaccgcctcgtccatgtcggcaacgtcggcacgggttgg
accatgcgcgaccgtcgtgccctgcaagcccggctgaacgaaatcacgcgcccggaaccg
cctttcgacgtcccgccgccgcgtcaggtggcgaacgcggcgcactgggtcgcacccgaa
ctggtcgccgacatcgagttccgggaggtcagttccgacgggctgcgccatcccagctgg
cgtgggctacgtcccgaccgtgacccccgtgaagcgaaggtgcccagtccggactga

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