KEGG   Nocardioides sp. JS614: Noca_2856Help
Entry
Noca_2856         CDS       T00443                                 

Definition
(GenBank) DNA primase-like protein
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
nca  Nocardioides sp. JS614
Pathway
nca03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:nca00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Noca_2856
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:nca03400]
    Noca_2856
Enzymes [BR:nca01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Noca_2856
DNA repair and recombination proteins [BR:nca03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Noca_2856
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: ABL82358
UniProt: A1SKM3
LinkDB All DBs
Position
complement(3029057..3030424)
Genome map
AA seq 455 aa AA seqDB search
MTGKLDAYRRKRDFTRTPEPAGAPAPGAGTGRFVVQRHRARRLHYDPRAAVEAGELHAEV
HGRKLRGRLVLVRRDGGGDSGGGDDWMLLHKHDEHAVEGWDPEDHPVSVVSGRTNDQVKA
DPDRLWRSDAPAAEASVSLLPEPLPDEAIDELESFGEQGTWEVFGRRLEVTNLDKVLFPA
PADGPPVSKRELLAYAARVAPVALPYLEGRALNMHRYPEGADRPGFWHKQRPEHAPEWLT
CWENPDADEGETTAYVVPDEPAALVWAANFGALEWHPWTSRTGRPHEPTYALIDLDPGER
TRWADLLVLARLHRTALEHVGVTARPKVTGRRGIQVWIPVVPGYTFDDTRAWVETLSRTV
GKVVPELVSWKWEVKQRKGLARLDYTQNAINKTLVAPYSPRPAPGAPVSVPIEWDELDDP
DLRPDRWAVRTVGDRLAERGDRSGRSWAPPRSCRR
NT seq 1368 nt NT seq  +upstreamnt  +downstreamnt
gtgaccggcaagctggacgcctacaggcgcaagcgcgacttcacgcgtacgccggagccg
gcgggcgcgcccgcgccgggcgccggcaccggccggttcgtcgtccagcggcaccgggcc
cgccggctgcactacgacccgcgcgccgcggtcgaggcgggggagctgcacgctgaggtg
cacggccgcaagctgcgcggccgcctggtcctcgtccggcgcgacggcgggggcgacagt
gggggtggcgacgactggatgctgctgcacaagcacgacgagcacgccgtcgagggctgg
gaccccgaggaccacccggtctcggtggtcagtggacgcaccaacgaccaggtgaaggcc
gaccccgaccggctgtggcgctccgacgcccccgccgcggaggccagcgtctcgctgctc
cccgagccgctgcccgacgaggccatcgacgagctcgagtcattcggcgagcagggcacc
tgggaggtcttcggccggcggctcgaggtgaccaacctcgacaaggtgctgttccccgcg
ccggcggacgggccgccggtcagcaagcgcgagctgctcgcctacgccgcgcgcgtcgcg
ccggtggcgctgccgtacctggagggccgggcgctcaacatgcaccggtatcccgagggt
gccgaccggcccggcttctggcacaagcagcggcccgagcacgcgcccgagtggctgacc
tgctgggagaacccggacgccgacgagggcgagaccacggcgtatgtcgtccccgacgag
ccggccgccctggtgtgggccgcgaacttcggggccctcgagtggcacccctggacctcg
cgcacggggcggccgcacgagccgacgtacgccctgatcgacctcgatcccggggagcgg
accaggtgggcggacctgctggtgctcgcccgcctgcaccgcaccgcgctcgagcacgtc
ggcgtcaccgcgcgccccaaggtgaccggccggcgcggcatccaggtctggatccctgtg
gtccccggctacaccttcgacgacacccgcgcgtgggtcgagacgctgtcgcggaccgtc
gggaaggtggtgcccgagctggtcagctggaagtgggaggtcaagcagcgcaagggcctg
gcccggctcgactacacccagaacgcgatcaacaagaccctggtcgcgccgtactcgccg
cggccggcgccgggcgcgccggtctccgtgccgatcgagtgggacgagctcgacgacccc
gacctgcgcccggaccgctgggcggtccgcacggtcggggaccggctcgccgagcggggc
gaccgttccgggcgctcctgggcgccgcccaggagctgccgccgctga

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