Notothenia coriiceps (black rockcod): 104951045
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Entry
104951045 CDS
T04920
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
104951045 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ncc03400
]
104951045 (msh2)
DNA repair and recombination proteins [BR:
ncc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
104951045 (msh2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_II
MutS_I
AAA_27
MutS_IV
Anticodon_2
Motif
Other DBs
NCBI-GeneID:
104951045
NCBI-ProteinID:
XP_010775985
UniProt:
A0A6I9NMV5
LinkDB
All DBs
Position
Unknown
AA seq
882 aa
AA seq
DB search
MAVQPKHNLSMDSAAESGFLSFIFSMPEKPDTTFRIFDRNDFYTVHGKDALFAAKEVFKT
NGVIKYLGSGSRKLESVCLSKMNFEAFVRDLLLVRQYRVEVYKNHSKSSKDWKLEYKASP
GNLTQFEEILFSGGTGAVGVAGVVAVRVATGADGQRVVGVGYVDAAQRTMGVCEFPDNEI
FSNLESLLVQIGPKECLLAQGDGNTDGSKLREVVERGGVLVSERKRAEFSSKDTVQDLNR
LLRAKKGDSVASNTLPELDKQVAMSCLAAVVRFLELLSDESNFNSFSLTSLNLGQYMRLD
NAAVRALNLFQGAPDDTSGAHSLAGLLNKCRTPQGQRLVNQWIKQPLMDKTKIEERLDMV
ESFVCDSELRQTCQEDLLRRFPDLHRLSKKFQRHSATLQDCYRVYQAVSHLPTLVSALER
YSGSYEVLLEAVFLSPLRDLQSDFVKYQEMIETTLDMNQIDHHEFLVKASFDPVLSELRE
KMDELEESMKAVLNSAARELGDKHTHQHTHTHQHTHQHTHARTALRPSLSIYTDGYVDPL
QTMSDVIAQLDAVVSFAVASVSAPVPFVRPRLLADGCRRMELTQARHPCMETDADTAFIP
NDITFTQGEKNFYIITGPNMGGKSTFIRQVGVIALMAQIGCFVPCEKAELSVIDSVLARV
GAGDSQVKGVSTFMSEMLETAAILRSATENSLIIIDELGRGTSTYDGFGLAWAISEHIAS
KISCFCLFATHFHELTALAAQESTVHNLHVTALTSHNTLTMLYRIKHGVCDQSFGIHVAE
LACFPPSVVAMAKEKAEELEEFQEPAGGKQEKGPEAKRRCTDKQDGETLIQEFLEKAKSL
PAATMSEEEVKTALRKMKQELLSKNNTYITEILSRCVPVKTV
NT seq
2649 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcaaccgaaacacaacctgtctatggacagtgcagccgaaagtggcttttta
agctttattttctccatgccggagaaaccggacacaactttcagaatatttgaccgtaat
gacttctacaccgtccacggaaaagatgcattattcgcggctaaggaagttttcaagacg
aatggggtcatcaaatatttgggctcagggagtcgcaagttggaaagtgtctgcctgagc
aagatgaacttcgaggcctttgtgagagacttgctgctggtgaggcagtacagagtggaa
gtttacaaaaaccacagcaagagcagcaaagactggaagctcgagtacaaggcctctcca
ggaaacttgactcagtttgaagagattctgttcagcgggggaaccggagcagtgggggtt
gcaggagttgtagctgtgcgtgttgctacaggagctgacggacagcgcgtggtcggggtt
ggctatgtggacgctgcccagaggacgatgggagtgtgtgagtttcctgacaacgagatc
ttctccaacctggagtctcttctcgtccagatcggccccaaagagtgtctcttggcccag
ggcgatggcaacactgacggcagtaaactacgggaggtggtggagcgaggcggcgtgctg
gtctctgagaggaagagagcggagttcagcagcaaagacacggtccaggatttgaaccgg
ctgctgagggccaagaagggagacagtgtggcgagcaacacgctgcctgagctggacaaa
caggtggccatgtcgtgcttggctgcagtggtgcgtttccttgagctgctctctgacgag
tccaactttaactccttcagtctgacctctctgaacctgggtcagtacatgaggctggac
aacgctgccgtcagggctctcaacctcttccagggagcccccgatgacacaagtggagct
cattcattggccggtctgttgaacaagtgccgcacgccgcagggtcagcgtctggtcaac
cagtggatcaaacagcctctcatggacaaaaccaaaatagaggagaggctggacatggtg
gagagctttgtgtgtgactctgagctcaggcagacctgtcaggaggatctgttgcggcgt
tttccggaccttcaccgtctgtccaagaagttccagcgtcactctgcgactcttcaggac
tgctaccgcgtctaccaggctgtgagccacctcccgacactcgtcagcgccctggagaga
tactcaggtagctacgaggttctgttggaggcggtgttcctctctcctctcagagacctg
caatctgactttgttaaataccaggagatgattgaaaccacgctggacatgaaccagatt
gaccaccacgagttcctggtgaaggcgtcattcgaccccgtgttgagcgagctgagagaa
aagatggacgagctggaggagagcatgaaggcggtgctgaacagtgcagccagagaacta
ggtgacaaacacacacaccaacacacacacacacaccaacacacacaccaacacacacac
gcacgcacggcactgagaccaagtttatctatctatacagacggctacgtggatcctctc
cagacgatgagcgacgtgatagcgcagctggatgccgtggtgagtttcgccgtggcgtcc
gtctccgctcctgtgccgttcgtgcggcctcgcctgctggcggacggctgcaggcggatg
gagctgacccaggccagacatccctgcatggagactgacgctgacaccgccttcatcccc
aacgacataaccttcacccagggagagaagaacttctacatcattacaggaccaaatatg
ggcggtaaatcgacgttcatccgtcaggtgggagtcatcgctctgatggcgcagattggc
tgctttgtgccgtgtgaaaaggcggagcttagtgtgattgacagcgtcctggccagggtg
ggagctggagacagccaggtcaaaggagtgtccacttttatgtctgagatgctggagacg
gctgccatcctgcgctcggcaacagagaactctctcatcataatcgacgagctcggaaga
ggcacgtccacgtacgacggctttggtctggcctgggccataagcgaacacatcgcctcc
aaaatcagctgcttctgtctgttcgccactcacttccacgagctgacggccctggcagcg
caggagtccaccgtccacaacctgcacgtcaccgctctaacctcacacaacactctcacc
atgctgtacaggatcaaacacggtgtgtgcgaccagagtttcggtatccatgtggccgag
ttggcttgcttcccgccatcggtggtggccatggcgaaggaaaaggcggaggagctggag
gagttccaggaaccagcgggggggaagcaggagaaggggcccgaggctaagagacgatgc
acggacaaacaagacggggaaaccctgatccaggagttcctggagaaggccaagtctctc
cctgctgccaccatgagtgaagaagaggtgaagacagcgctgaggaagatgaagcaggag
ctcctctccaaaaacaacacatatatcacagagatcctttcacgctgtgttcctgtgaaa
acagtttga
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