Notothenia coriiceps (black rockcod): 104957582
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Entry
104957582 CDS
T04920
Name
(RefSeq) ATP-dependent RNA helicase DHX8-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104957582
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ncc03041
]
104957582
Enzymes [BR:
ncc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104957582
Spliceosome [BR:
ncc03041
]
Complex C
Other components
Step II factors
104957582
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
104957582
NCBI-ProteinID:
XP_010783528
UniProt:
A0A6I9P9J1
LinkDB
All DBs
Position
Unknown
AA seq
597 aa
AA seq
DB search
MSVAKRVSEEYGCRLGQEVGYTIRFEDCTSIETVIKYMTHGMLQRECLLDPDMSQYTLIM
LDEAHERTIHTDVLFGLLKKTIKKRKELKLIVSSATLDAVKFSQYFCEAPIFTIPGRTFP
VEVLYCKEPETDYLDASLITVMQIHLTEPPGDLLVFLTGQEEIDTACEILYERMKSLGPN
VPELIILPVYSALPSEMQTRIFDPAPPGSRKVIIATNIAETSLTIHGIYYVVDPGFVKQI
VYNSKTGIDQLVVTPISQAQAKQRSGRAGRTGPGKCYRLYTERAYRDEMLTTNVPEIQRT
SLASTVLSLKAMGINDLLAFDFMDAPPMETLILAMEQLYTLGALDDEGLLTRLGRRMAEF
PLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVFYRPKDKQALADQKKAKFHQPEGDHL
TLLAVYNSWKNNKFSNPWCYENFIQARSLRRGQDIRKQMLGIMDRHKLDVVSCGKATVRV
QKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLTTKEYMR
EVTTIDPRWLVEFSPAFFKVSDPTRLSKQKKQQRLEPLYNRYEEPNAWRISRAFRRR
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atgtccgtggccaagagggtctctgaggagtacggctgccgtctaggccaagaggttggt
tacaccattcgatttgaggactgcaccagtattgaaacagtgatcaagtacatgacccac
ggcatgctgcagagggagtgtctgctggacccagacatgagtcagtataccctcatcatg
ctggatgaggcccatgagagaacaatccacactgatgtgctctttggtcttctcaagaag
accataaaaaagcgcaaagagctgaagcttattgtgtcctcagccacactggacgccgtg
aagttctctcagtatttctgtgaagcgcccatcttcaccatcccaggaagaacgttccca
gtggaggttctgtactgcaaggagcctgagacggactacctggatgccagtctcatcact
gtcatgcagatccacctgactgaacctccaggggacctcctggtgtttctgacgggacag
gaggagatcgacactgcttgtgagatcctgtacgagagaatgaagtccctggggccgaat
gttcctgaactgatcattctgccagtttattctgcgctgcccagtgagatgcagaccagg
atctttgaccccgcaccccccggcagcagaaaggtcatcattgccactaacattgcagag
acatctcttactatccatggaatctactacgtggtggaccctggctttgttaaacagatc
gtttataactcaaagaccggcatcgaccagcttgttgtgactcccatatcacaggcgcag
gccaagcagcggtccgggcgggcgggcaggacgggtccggggaagtgttaccggctctac
actgagagggcctacagagacgagatgctgaccaccaacgtgccggagatccagagaacc
agcttagccagcacggtgctctctctgaaggccatgggcatcaacgacctcctggctttt
gacttcatggacgctcctcccatggagacgctgatcctcgccatggagcagctgtacact
ctgggagcgctggacgatgaaggcttactcacacggctgggaagaaggatggcggagttt
cctctggagcccatgctgtgtaagatgttgatcatgtccgtccatctgggctgcagtgaa
gagatgctcaccatcgtctccatgctgtctgtgcagaacgtcttctacagaccgaaggac
aagcaggccttggctgaccagaagaaggcaaagtttcaccagcctgagggagaccacctg
accctgctggctgtctacaactcctggaagaacaacaagttctccaacccctggtgttat
gagaacttcatccaggctcgctccctgcgcagaggccaggacatccgcaagcagatgctg
ggtatcatggacagacataaactggacgtggtatcttgtggtaaagccacagtccgagtc
cagaaagccatctgcagtggcttcttcaggaacgccgccaaaaaggatcctcaggagggt
taccgcacccttatagaccaacaagttgtttacatccacccctccagtgctctgttcaac
cgccagcctgagtgggttgtgtaccatgagttggtgctgaccaccaaggagtacatgcgg
gaggtgaccaccatcgacccccgctggctggtggagttttctccagccttcttcaaagtg
tcagatcccacgcgcctcagcaagcagaagaaacaacagcgcctcgagcctctgtacaac
cgctacgaggaacccaacgcctggagaatctcccgagcctttaggcgccgttag
DBGET
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