KEGG   Notothenia coriiceps (black rockcod): 104961587Help
Entry
104961587         CDS       T04920                                 

Gene name
lig4
Definition
(RefSeq) DNA ligase 4
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
ncc  Notothenia coriiceps (black rockcod)
Pathway
ncc03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:ncc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    104961587 (lig4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ncc03400]
    104961587 (lig4)
Enzymes [BR:ncc01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     104961587 (lig4)
DNA repair and recombination proteins [BR:ncc03400]
 Eukaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     104961587 (lig4)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_IV DNA_ligase_A_C BRCT_2 BRCT RNA_ligase mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID: 104961587
NCBI-ProteinID: XP_010788208
LinkDB All DBs
Position
Unknown
AA seq 910 aa AA seqDB search
MEGSSTSDAAAQPSVAAQVPFLHLCSTLEKIQKTKLRPEKSKTLGDFIESWRKFHSALHK
DNPKTTDSFYSAMRLIVPSFERERMAYGIKESMLAKLYIDVLGLPKNGPEANKLLNYRAP
TTSQGEAGDFAGMAYFVLKKRCTSQGNLSIKEVNDFLDSVAINNASKQKGLVKKSLLHII
TQSSALEQKWLIRMILKDMKLGISKETVLQVFHPDASELYNVNTDLNKVCQQLHNPSTSL
SDVSIGLFSAFKPMLAGVANIRNVEKQMGNSPFFIQTKLDGERIQLHKDGDVYKYFSRNA
FEYTQQFGASPLEGSLTPYIHNVFKSHVVNCILDGEMMAYNPTTDIFMQKGSKFDIKKLM
DDSELQTCFCVFDVLLVNDQKLGKETLKKRHETLQTVFTPVKGRIHLVPKADARTVQDVV
NALNDAIDSREEGIMVKDPLSIYKPDKRGEGWLKIKPEYVDGLMDELDLLIVGGYWGKGK
RGGMMSHFLAAVAEAPKPGEKPSVFHSFCRIGSGYTMKELYDLGLKLAKHWKVYRKNDPP
ASILCGTEKPEVYIEPCNSVILQVRAAEIVGSDMYKTNCTLRFPRIEKIREDKEWHQCMT
LAELDQLRGKASGKLASRHLYIDGNEPQKKKRKPLVKPKKVVGIIDHFKHQDLSGVTKET
DMFEDVEFCILNGTEQNPKAELEKGVARCGGVVVQNPGRDTYCVVAGVENMRVKNLVLSD
QHDVVWAAWLLECLDQKEVVPWQPRHMIHMSPSTREHFAKEYDSYGDSYFVDTDEQQLRE
VFARISNEDTAAAVNISQVEQRYSWEDIPTSMFRPFEVYMDRFTDIGEPGTAIKASCLDI
RALEFRYHGGKVVQKLEEGVSHVIISEETRLLHLRNLRRCFRKKFKIVRESWLTDSIKAG
YLLNDTDYLA
NT seq 2733 nt NT seq  +upstreamnt  +downstreamnt
atggagggatcttctacaagtgatgcagctgctcagccctctgtcgctgctcaagttcct
ttccttcatctttgctccaccttagagaaaatccagaagactaaactccgcccagagaaa
tccaagacccttggggatttcattgagtcatggaggaagtttcattctgccctccacaaa
gacaaccccaaaacaacagactctttctactcagctatgcgcctcatagtcccttccttt
gaacgagagcgcatggcttacggcatcaaagagagcatgttggctaaactttatatcgac
gtcttaggcctcccaaagaatggcccagaagccaataaacttttgaactaccgtgctccg
actacatcccaaggggaagctggagactttgccggcatggcgtactttgtgctgaagaaa
cgctgcaccagccaaggaaatctaagcatcaaagaagtaaacgactttctggattcggta
gcaatcaacaacgctagcaagcagaaaggtcttgtgaaaaagagtctgctgcacatcatc
acccagagctcggctctcgagcagaagtggctcatcagaatgattctgaaagacatgaag
ctcgggatcagcaaagaaactgttcttcaagtcttccacccggatgctagcgagctctat
aatgtcaacacggacttaaacaaagtctgccagcagctccacaacccctctacgtcttta
agcgatgtctctatcggactcttctccgcattcaagcctatgttggcgggtgtggcgaac
atccgcaatgtggagaaacagatgggaaacagcccatttttcattcaaactaaactggat
ggagagcggatacagcttcacaaagacggcgacgtgtacaagtacttcagtcgaaacgct
tttgagtacacccagcagtttggcgcatctccactggaaggctcgctgacgccttacatc
cacaacgttttcaaaagccacgtcgtaaactgcatcctcgacggggagatgatggcgtac
aacccgaccacggacatcttcatgcagaaagggagcaaattcgacatcaagaagctaatg
gacgactctgagctacagacgtgcttctgtgtgtttgacgtgctgttagtcaatgaccag
aagcttggcaaggaaacactaaagaagcgccacgagacccttcaaaccgttttcactcca
gtcaaggggaggatacatctggtaccaaaggccgatgccagaaccgtgcaggacgtggtg
aacgccctcaatgacgccattgacagcagagaagaggggatcatggtgaaggatcctttg
tccatctacaaacctgacaagcgaggagagggatggctgaaaataaagccagaatatgtg
gatggcttgatggatgagcttgacctgctgattgttggcggatactgggggaaaggaaaa
cggggcggtatgatgtcccatttcttagctgccgtcgcagaagctccaaagcctggcgag
aaaccctcagttttccactctttttgccgcatcggctctggctacaccatgaaggagttg
tacgacctcggtttaaagctagccaagcattggaaagtctaccgaaaaaacgacccgcca
gcatccatcttgtgcggaaccgagaaaccagaagtctacatcgagccctgcaactcggtc
atcctccaggtgagggcggcggaaatagtgggcagcgacatgtataaaaccaactgcacc
ctgcgcttccccaggattgagaagatccgcgaggacaaggagtggcaccagtgcatgaca
ctcgcagagctggaccagttacgcgggaaggcctctgggaaactagcttcgcggcacctc
tacatcgatggcaacgaaccgcagaagaagaagcgcaagccactggtcaaacccaagaag
gtggtcgggatcatcgaccacttcaagcaccaggacctctccggggttaccaaggagacg
gatatgtttgaggatgtcgagttctgtatcctgaatggcactgagcagaaccccaaagcg
gagctggaaaagggcgtggccaggtgtggtggtgtcgtggttcaaaacccaggacgggac
acctactgcgtggttgccggcgtggagaacatgcgcgtgaagaacctggttttgtccgac
cagcatgacgttgtgtgggccgcctggctgctggagtgcctggaccagaaggaagtggtc
ccatggcaaccgcggcacatgatccacatgtcgccctccaccagggagcacttcgccaag
gagtacgacagctatggcgacagctacttcgtggacacggacgagcagcagctgcgggag
gtgtttgcacgaatcagcaacgaggacacggcggcggcggtgaacatcagccaggtggag
cagcgctacagctgggaggacattcccaccagcatgttcaggccatttgaggtctacatg
gacagattcaccgacattggagaacctggaaccgccataaaagcttcctgtttggacatc
agggcgctggagtttcgctaccatggaggtaaggtggtgcagaagttggaggaaggagtc
tctcatgtcattatctcagaggaaaccagacttctgcacttaaggaatctgaggcgctgc
tttaggaagaagtttaagatcgtaagagaatcatggttgactgattcaataaaagcaggg
tatctgctgaatgacactgactacttggcttaa

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