Neptunomonas concharum: F0U83_02830
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Entry
F0U83_02830 CDS
T06194
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ncu
Neptunomonas concharum
Pathway
ncu03030
DNA replication
ncu03430
Mismatch repair
ncu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ncu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
F0U83_02830 (dnaE)
03430 Mismatch repair
F0U83_02830 (dnaE)
03440 Homologous recombination
F0U83_02830 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ncu03032
]
F0U83_02830 (dnaE)
03400 DNA repair and recombination proteins [BR:
ncu03400
]
F0U83_02830 (dnaE)
Enzymes [BR:
ncu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
F0U83_02830 (dnaE)
DNA replication proteins [BR:
ncu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
F0U83_02830 (dnaE)
DNA repair and recombination proteins [BR:
ncu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
F0U83_02830 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
tRNA_anti_2
CcmE
Motif
Other DBs
NCBI-ProteinID:
QEQ95728
UniProt:
A0A5P1R7Z8
LinkDB
All DBs
Position
594907..598401
Genome browser
AA seq
1164 aa
AA seq
DB search
MSDVNFVHLRVHTEFSLVDGLTRIKGLVAAAKEAGMPAVGITDQVNLFGLVKFYKAATGA
GIKPICGADLLVLNESDNEGTPFRLTLLVQNARGYRNLMELISRAYAEGQNYLVDKALVK
KSWVAEKSEGLIALSGAKEGEIGKAMVSGNGMADALLAEWMAVFPERFYLEVQRTGRQGE
DKIISESVRLGLSLGCPLVATNEVMFLAEDDFDAHEARVCINQGRTLDDPRRPKDYSPQQ
YFRTPQEMVELFADIPSAVENTLEIAKRCNIELDLGTYYLPKYPIPEGMTMDEYFCKVSE
DGLEERLRILLDKNDPDYAEKRKPYDERLKFELDIITQMGFPGYFLIVMDFIQWAKDNGI
PVGPGRGSGAGSLVAYAQKITDLDPLEYDLLFERFLNPERVSMPDFDIDFCMDNRDQVID
YVARTYGRDAVSQIITFGTMAAKAVVRDVARVQGKAFGLADKLSKLIPFEIGITLSKAME
QEPALSDFVESSEEAQEIMEMAYKLEGVTRNVGKHAGGVVIAPTKLTDFSATYCDEEGQG
LVTQFDKGDVEEAGLVKFDFLGLRTLTIIDWALKTINDIRAKKGEEPLDITLINLEDPST
FELLQSAETTAVFQLESSGMKDLVRRLLPSRFEDIVALVALFRPGPLQSGMVDDFINRKH
GRAEMAWPHPDYQLDSLQPVLEPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKK
PEEMEKQRSIFLEGCGNNGIDKDLAGNIFDLVEKFAGYGFNKSHSAAYALVSYQTAWLKR
HYPAPFMAAVMSSDMQNTDKVVIFIEECRKMKLPPALPDVCSGEYMFTVNEAGEIVYGLG
AIKGVGEGPIEAIVAARQDGKGDFKDLFDFCERVGAKNLNKRVLEALVRSGALDKLGADR
AVLWQAIGDALQAAGQSARNQDAGIFDLFGEVEAEAPRDPYEEYQGVRRWTDKERLRGEK
DTLGLYLTGHPIDEYEKELSRFISKKIVDLQPGRGKQQKIAGLIVDQRVKKTKRGDSLCF
LTLDDRSARIDVTVYGELYEQTREWAVKDTIVIMEGEITQDDYSGGLKVRCNKLSSIPMA
RQQFARCVHVCGGEKYLSGRGLQAFTKTIEAYRSPQGLCVELEYQRSDAGGVIQLGEEWK
LEATDELLITLKEHFGDDCVSLAY
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacgtaaactttgtccatctcagggtacatactgaattttctttagttgatggc
ttgactcgaattaaagggttagtagcggcagcaaaagaagctggtatgccggcggtaggg
ataacagatcaggttaatttatttggcttggtgaagttctataaagccgctacgggtgca
ggtattaagcctatttgcggtgcagacctgttagtactgaatgagtcagataatgaaggc
actccttttcgtttaaccttgctggtgcaaaatgcccgaggctaccgaaacttgatggag
ctgatctcccgtgcatacgccgaaggccagaattacctcgttgacaaagctttagtgaaa
aagtcttgggtggctgaaaagtctgaaggcttgattgcgctatcgggagcgaaagagggc
gaaatcggcaaagcaatggtgtcaggcaatggaatggctgatgcgcttctggcggaatgg
atggcggtgtttcctgagcgattctatttagaggttcagcgaacaggacgtcaaggtgaa
gacaagattattagtgaaagtgtgcgcctaggcctctccttggggtgtcccttggttgca
acaaacgaggttatgtttcttgcagaagatgattttgatgcccatgaggctcgggtttgt
atcaaccaagggcgtactttggatgaccctcgccgccccaaggattactcgcctcaacag
tattttagaacgcctcaagagatggttgagctgtttgctgatatcccaagtgctgtcgaa
aataccctagagattgctaagcgctgtaacattgaactagatttgggaacctactaccta
cccaagtaccctatccctgaagggatgacgatggatgagtacttttgcaaggtatctgaa
gacggccttgaagaacgtctgcggattttgctggataaaaacgatccagattatgcagag
aaacgaaaaccttatgatgagcgtctcaaatttgagttagatatcattactcaaatgggc
tttcctggttactttttgatcgttatggactttatccaatgggccaaagataacggcatc
ccggtgggaccaggtcgtggctcgggcgcaggctcattagtcgcttatgcgcaaaaaatt
acagatcttgacccactggaatacgaccttctatttgaacgattcctaaaccctgaacgt
gtttctatgcccgattttgatatcgatttctgtatggataatcgtgatcaggtaattgat
tatgttgctcggacatacggacgtgacgctgtttcccagattattacctttggaacgatg
gcagcgaaagcggtggtgcgtgatgttgcacgtgtgcaagggaaggcgtttgggttggcg
gataagctttctaagctgatcccatttgaaataggtataaccctgagcaaggcgatggag
caagagcctgctttaagcgacttcgtggaaagtagcgaagaagctcaggaaatcatggag
atggcatataagctggaaggggtcacccgcaacgtcggcaagcatgccggtggtgtcgtg
atagcgccgacaaaactaaccgacttctcggccacctattgtgatgaggaaggtcaaggg
ttggttactcagtttgacaagggagatgttgaggaagctggccttgttaagttcgacttc
ttgggattgcgtactctgacaatcattgattgggccttaaagacgatcaatgatattcgt
gcaaagaaaggtgaagagccgttagatatcaccttaattaatttggaagacccgtccacg
tttgagcttttacagtcagctgaaacgacagcggtgttccagttagagtccagcggtatg
aaggatctggttcggcgccttctcccctctcgttttgaagatattgtggcattggtggcg
ctctttcgccctggtccgttgcagtcaggcatggtggatgactttatcaaccgaaagcac
gggcgtgcggaaatggcatggcctcatcccgattatcagttagatagccttcagcctgta
ttggagccaacctacggaatcatcctctaccaagagcaagtaatgcaaattgctcaggtg
atggcgggttacacgctgggtggtgctgatatgctgcgtcgagcgatgggtaagaagaaa
ccggaagagatggagaaacagcgctctatcttccttgaagggtgcgggaataacggcatc
gataaagatctggcggggaatatctttgatctggtagaaaagtttgccggttatggcttt
aacaaatcccactcggctgcatacgcactggtgtcataccaaaccgcttggctgaaacga
cactacccagcgccatttatggcggcggtcatgtcatctgatatgcaaaataccgataaa
gttgtgatctttatcgaagagtgccgcaagatgaagttgccgccagcattgccagatgtc
tgtagcggtgaatatatgttcaccgtcaatgaggccggtgaaattgtttatggtttgggt
gcaatcaaaggggtaggggaaggaccgattgaagccattgttgctgcacgccaagatggc
aaaggggatttcaaagatctgttcgatttttgtgagcgagtaggcgctaaaaatctaaat
aaacgcgtacttgaagcactagttcgttcaggtgcgttggataaattgggtgccgataga
gcggtactttggcaggcaataggcgacgctctgcaggcggctgggcaaagtgcgcgcaat
caggatgcgggaattttcgacctgtttggcgaagtggaagctgaggcacccagagatcct
tacgaggagtatcaaggtgtgcggcggtggactgacaaggagcgactgcgtggagaaaag
gatacgctgggtctttatttgacgggccaccctatagatgaatatgaaaaagagcttagc
cgctttatatcgaaaaaaattgttgatctgcagcccgggcgaggtaaacagcagaagata
gcgggcttaattgttgatcagcgtgtaaaaaagaccaagcgaggcgattctctgtgtttt
ctgaccttagatgatcgaagcgcgagaattgatgtgacggtctatggtgaactctatgaa
caaacgcgtgaatgggcagtaaaagatacgattgtcatcatggagggcgaaattacccaa
gatgactattcaggtggtctcaaggttcgttgtaataagctatcaagtatacccatggct
cgacagcagtttgcccgttgtgtgcatgtctgtggcggtgaaaagtacctatcagggaga
gggttgcaggcgtttactaaaacgatagaagcttatcgttctcctcaaggtctatgtgtg
gagctggaatatcagcgaagtgatgccggtggagtcattcaattgggcgaggagtggaag
ctcgaagcgactgatgagttattaatcaccttaaaagaacactttggtgacgattgcgtc
tctttagcgtactga
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