KEGG   Neptunomonas concharum: F0U83_15800
Entry
F0U83_15800       CDS       T06194                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
ncu  Neptunomonas concharum
Pathway
ncu03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:ncu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    F0U83_15800 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ncu03021]
    F0U83_15800 (rpoB)
   03400 DNA repair and recombination proteins [BR:ncu03400]
    F0U83_15800 (rpoB)
Enzymes [BR:ncu01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     F0U83_15800 (rpoB)
Transcription machinery [BR:ncu03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     F0U83_15800 (rpoB)
DNA repair and recombination proteins [BR:ncu03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      F0U83_15800 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_2 DOCK-C2
Other DBs
NCBI-ProteinID: QEQ98059
UniProt: A0A5P1REI5
LinkDB
Position
complement(3318385..3322485)
AA seq 1366 aa
MAYSYTEKKRIRKDFSKLLQVMDVPYLLAIQLDSYRKFLQEGVEAGDRKEEGLHAAFKSV
FPIVSYSGNAALEYVGYRLGEPVFDVKECQLRGVTYAAPLRVKVRLVIYDRETSNKSVKD
IKEQEVYMGEMPLMTDNGTFVVNGTERVIVSQLHRSPGVFFDHDKGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDALFVRIDRRRKLPATILLRALGYEASEILEIFFENTNWTLSASG
IQMELVPERLRGETMSFEIKSPQGDVVVEAGRRITPRHIKKMADASMTQLDVPMEYLAGK
AIAKDIIDPATGELICPCNTEVTEELVAKLLAANVTAIETLYTNDLDCGPFISDTLRIDP
TRSQLESLVEIYRMMRPGEPPTKESAEALFENLFFSEERYDMSAVGRMKFNRRLGRKEEV
GSGVLDKDDILDVMKTLIDIRNGKGIVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAV
RERLSMAESDGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLATFARTNDYGFLETPYRKVV
DGVVTDDIEYLSAIEENKYVIAQASALMDENRRLTDELVAVRHQNEFTVMTPDRVDFMDV
SPRQVVSIAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPVVGTGMERYVARDSGVC
ITAKRGGVIESVDAARIVVRVNDDEVTAGDAGVDIYTLTKYTRSNQNTCINQRSIVRQGE
VVSRGDIMADGPSVDMGELALGQNMRIAFMPWNGYNFEDSILISERVVQEDRFTTIHIQE
LTCVARDTKLGSEEITSDIPNVGESALAKLDESGIVHIGAEVGPGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVKGGTTGKVIDVQVFTRDGVQKDERALSIEKAEMDA
IRKDLNDEYRIVEQATYERLAKVLVGLKADGGAGLKKGEEITDAFLGEIKKDEWFKIRVS
DDAVSEQLEQAQAQLLERREELDKKFEDKKRKLQTGDDLAPGVLKIVKVYVATKRRVQPG
DKMAGRHGNKGVISVIMPVEDMPYDENGEPVDIVLNPLGVPSRMNVGQILETHMGAAAKG
LGRKINGMLEVEREKAETVKEIREFLHKIYNSELDGWESSRKEDLDSFSDDEIMELARNL
CGGVPLATPAFDGAKEAEIKELLRLADMNDSGQVTLFDGRTGDQFERQVTVGYMYMLKLN
HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD
DVNGRTKMYKNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIELEND
NT seq 4101 nt   +upstreamnt  +downstreamnt
atggcttattcatatactgaaaagaaacgcatccgcaaagatttcagcaaattgctgcaa
gtcatggatgtaccttacctgctagcgatccagctagactcttaccgcaaattcctccaa
gaaggagtggaagccggagatcgtaaagaggaaggcctgcacgcggcttttaaatctgta
tttcctattgtctcttattccggcaatgcggctttggaatatgttggctatcgtcttggt
gagcccgtatttgatgttaaagagtgtcaactgcgtggtgtgacctatgcggcaccattg
cgtgtgaaagttcgcttagtgatctatgatcgcgaaacgtcgaacaagtcagtcaaagat
attaaagaacaagaagtctacatgggcgaaatgcctttgatgacggataacggcactttt
gttgtcaacggaacagagcgtgttattgtatctcagttgcaccgttcgccgggtgtgttc
tttgatcacgataaaggtaaaactcactcttcgggcaagttgttgtattcagctcgtatt
attccttatcgtgggtcttggttagactttgagtttgatccaaaagatgcgcttttcgtg
cgtatcgatagacgtcgtaagctaccagcaactatcttgctacgtgcgttaggctatgaa
gcaagcgagattttagagattttctttgagaatactaactggactttgtcggccagtggt
attcaaatggaattggtgcccgaacgcctacgtggtgaaaccatgtcgttcgagattaag
agcccacagggtgatgtggttgttgaagcgggtcgtcgtattactccgcgccacattaaa
aagatggctgatgcctctatgacacagttagatgttcctatggaatatctagccggtaag
gcgatcgccaaagatattatcgaccctgctacgggtgaactcatctgcccttgtaatact
gaagtgactgaagagttagtcgctaagctattggctgctaatgtaacggctattgagaca
ctctataccaacgatttggattgcggtccgtttatttctgatacattgcgtattgaccca
actcgcagccagttggagtctttggttgaaatttaccgcatgatgcgccctggtgagcca
ccaaccaaagaatcagcagaagcgctattcgaaaacctcttcttctctgaagagcgttac
gatatgtctgctgttggtcgtatgaaatttaatcgccgccttggccgtaaagaagaagtt
ggctctggcgtactggataaagatgacattcttgatgtcatgaaaactttgatcgatatc
cgcaacggtaaaggtattgttgatgatatcgaccatttaggtaaccgccgtattcgctct
gttggtgagatggcagaaaaccagttccgcgtcggccttgtacgtgtagaacgcgcggtc
cgcgagcgtctgagcatggctgaatctgatggtttgatgcctcaagatttaataaatgct
aagccagtggctgctgcagtgaaagagttctttggctcttcacagttgtcgcagtttatg
gatcaaaacaacccgttgtcagaagttactcataagcgtcgtgtatctgcattgggcccc
ggcggtttgacgcgtgaacgtgcaggcttcgaggttcgtgacgttcacccaacgcactac
ggtcgtgtatgtcctatcgaaacgccagaggggccaaacattggtttgatcaactccttg
gcaacatttgcgcgcacaaacgattatggtttccttgagacgccataccgtaaagtggtt
gatggtgttgttactgacgatatcgaatacttgtcagcgattgaagagaacaaatatgtc
atcgcgcaggcttcggccttgatggatgagaaccgtcgtttaactgatgagctggttgcg
gttcgtcaccagaacgaatttacggtaatgacgcctgatcgcgttgacttcatggacgtt
tcaccacgtcaggttgtatctatagcggcctctttgattccgttccttgagcatgacgat
gctaaccgtgcattgatgggttcaaacatgcagcgtcaggctgttccaacactgcgtgct
gataagccggtagttggtacgggcatggagcgctatgttgctcgtgactcgggtgtatgt
atcaccgctaaacgtggtggagttatcgaatctgttgatgctgcacgtattgttgtgcgt
gtgaatgatgatgaagtgacagcgggtgatgcgggtgttgatatttacacgctgaccaag
tacacgcgttctaaccagaatacttgtattaaccagcgttcgattgtccgccagggcgaa
gtggtaagccgcggtgatatcatggcggatggtccatcagttgatatgggtgagctggcg
ttaggccagaacatgcgcatcgccttcatgccttggaatggttacaacttcgaagactcg
atccttatctcggagcgtgttgttcaggaagatcgtttcacaacgattcatattcaggaa
ctgacctgtgtggcgcgtgataccaaattgggatctgaggaaattacttccgatattcca
aatgtgggagagtctgcactggccaaactggatgagtccggtattgtgcatattggtgcg
gaagttggccctggagatatccttgtcggtaaggttacaccgaagggagaaactcagctg
actccagaagagaaactgctacgtgcgatctttggtgagaaagcgtctgatgtaaaagat
acctctttgcgcgttaaaggtggtacgaccggtaaagttattgatgtacaggtctttact
cgtgatggtgttcaaaaagatgagcgtgctctctcgattgaaaaagccgagatggatgct
attcgtaaagacttaaatgacgaatatcgcattgttgagcaagcaacttatgagcgctta
gcaaaagtgttggttggcctcaaggctgatggtggtgctggcttgaagaaaggcgaagag
atcacagacgctttcttaggtgaaattaagaaagatgagtggttcaagattcgcgtatct
gacgatgccgtttctgagcagttagagcaagcacaagcgcaattgctagaacgtcgtgaa
gagcttgataagaaattcgaagataaaaaacgtaagcttcagacaggcgatgatcttgcg
ccaggcgttcttaagatcgttaaggtttatgtggcaacaaaacgccgcgtacagcctggt
gataagatggcgggccgccacggtaacaaaggtgttatctcggtcattatgcctgtagaa
gatatgccttacgacgaaaatggtgagccagtagatatagtgctgaacccgctgggtgta
ccatcgcgtatgaacgttggtcagattctagaaacgcatatgggtgcagccgcaaaaggc
ctgggtcgtaagatcaatggcatgttggaagtcgagcgcgaaaaggcagaaacggtcaaa
gagattcgtgaattcctgcacaaaatctataactcagagctagacggctgggagtcttct
cgtaaagaagatctggatagtttctctgatgatgagattatggagttagcgcgcaatctg
tgcggtggtgttccattagcaacgcctgcatttgacggtgcgaaagaagcagaaatcaaa
gagcttttacgtctggctgacatgaatgatagtggtcaggtaacgctgtttgatggtcgt
accggtgatcagtttgagcgtcaggtgactgttggttacatgtacatgctcaagcttaac
cacttggtggatgacaaaatgcatgctcgttctaccggttcttatagcttggttactcag
cagccgctgggcggtaaggctcaattcggtggtcagcgcttcggtgagatggaagtgtgg
gcactagaagcttatggagccgcttatacattgcaggagatgttaaccgtgaagtcggat
gacgttaatggccgtaccaaaatgtataagaatatcgttgatggcgaccacagaatggag
ccgggaatgccggaatcattcaacgtattgatcaaagagatccgctctttgggtatcgat
atcgagcttgagaacgactaa

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