Neptunomonas concharum: F0U83_15800
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Entry
F0U83_15800 CDS
T06194
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ncu
Neptunomonas concharum
Pathway
ncu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ncu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
F0U83_15800 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncu03021
]
F0U83_15800 (rpoB)
03400 DNA repair and recombination proteins [BR:
ncu03400
]
F0U83_15800 (rpoB)
Enzymes [BR:
ncu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
F0U83_15800 (rpoB)
Transcription machinery [BR:
ncu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
F0U83_15800 (rpoB)
DNA repair and recombination proteins [BR:
ncu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
F0U83_15800 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
DOCK-C2
Motif
Other DBs
NCBI-ProteinID:
QEQ98059
UniProt:
A0A5P1REI5
LinkDB
All DBs
Position
complement(3318385..3322485)
Genome browser
AA seq
1366 aa
AA seq
DB search
MAYSYTEKKRIRKDFSKLLQVMDVPYLLAIQLDSYRKFLQEGVEAGDRKEEGLHAAFKSV
FPIVSYSGNAALEYVGYRLGEPVFDVKECQLRGVTYAAPLRVKVRLVIYDRETSNKSVKD
IKEQEVYMGEMPLMTDNGTFVVNGTERVIVSQLHRSPGVFFDHDKGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDALFVRIDRRRKLPATILLRALGYEASEILEIFFENTNWTLSASG
IQMELVPERLRGETMSFEIKSPQGDVVVEAGRRITPRHIKKMADASMTQLDVPMEYLAGK
AIAKDIIDPATGELICPCNTEVTEELVAKLLAANVTAIETLYTNDLDCGPFISDTLRIDP
TRSQLESLVEIYRMMRPGEPPTKESAEALFENLFFSEERYDMSAVGRMKFNRRLGRKEEV
GSGVLDKDDILDVMKTLIDIRNGKGIVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAV
RERLSMAESDGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLATFARTNDYGFLETPYRKVV
DGVVTDDIEYLSAIEENKYVIAQASALMDENRRLTDELVAVRHQNEFTVMTPDRVDFMDV
SPRQVVSIAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPVVGTGMERYVARDSGVC
ITAKRGGVIESVDAARIVVRVNDDEVTAGDAGVDIYTLTKYTRSNQNTCINQRSIVRQGE
VVSRGDIMADGPSVDMGELALGQNMRIAFMPWNGYNFEDSILISERVVQEDRFTTIHIQE
LTCVARDTKLGSEEITSDIPNVGESALAKLDESGIVHIGAEVGPGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVKGGTTGKVIDVQVFTRDGVQKDERALSIEKAEMDA
IRKDLNDEYRIVEQATYERLAKVLVGLKADGGAGLKKGEEITDAFLGEIKKDEWFKIRVS
DDAVSEQLEQAQAQLLERREELDKKFEDKKRKLQTGDDLAPGVLKIVKVYVATKRRVQPG
DKMAGRHGNKGVISVIMPVEDMPYDENGEPVDIVLNPLGVPSRMNVGQILETHMGAAAKG
LGRKINGMLEVEREKAETVKEIREFLHKIYNSELDGWESSRKEDLDSFSDDEIMELARNL
CGGVPLATPAFDGAKEAEIKELLRLADMNDSGQVTLFDGRTGDQFERQVTVGYMYMLKLN
HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD
DVNGRTKMYKNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIELEND
NT seq
4101 nt
NT seq
+upstream
nt +downstream
nt
atggcttattcatatactgaaaagaaacgcatccgcaaagatttcagcaaattgctgcaa
gtcatggatgtaccttacctgctagcgatccagctagactcttaccgcaaattcctccaa
gaaggagtggaagccggagatcgtaaagaggaaggcctgcacgcggcttttaaatctgta
tttcctattgtctcttattccggcaatgcggctttggaatatgttggctatcgtcttggt
gagcccgtatttgatgttaaagagtgtcaactgcgtggtgtgacctatgcggcaccattg
cgtgtgaaagttcgcttagtgatctatgatcgcgaaacgtcgaacaagtcagtcaaagat
attaaagaacaagaagtctacatgggcgaaatgcctttgatgacggataacggcactttt
gttgtcaacggaacagagcgtgttattgtatctcagttgcaccgttcgccgggtgtgttc
tttgatcacgataaaggtaaaactcactcttcgggcaagttgttgtattcagctcgtatt
attccttatcgtgggtcttggttagactttgagtttgatccaaaagatgcgcttttcgtg
cgtatcgatagacgtcgtaagctaccagcaactatcttgctacgtgcgttaggctatgaa
gcaagcgagattttagagattttctttgagaatactaactggactttgtcggccagtggt
attcaaatggaattggtgcccgaacgcctacgtggtgaaaccatgtcgttcgagattaag
agcccacagggtgatgtggttgttgaagcgggtcgtcgtattactccgcgccacattaaa
aagatggctgatgcctctatgacacagttagatgttcctatggaatatctagccggtaag
gcgatcgccaaagatattatcgaccctgctacgggtgaactcatctgcccttgtaatact
gaagtgactgaagagttagtcgctaagctattggctgctaatgtaacggctattgagaca
ctctataccaacgatttggattgcggtccgtttatttctgatacattgcgtattgaccca
actcgcagccagttggagtctttggttgaaatttaccgcatgatgcgccctggtgagcca
ccaaccaaagaatcagcagaagcgctattcgaaaacctcttcttctctgaagagcgttac
gatatgtctgctgttggtcgtatgaaatttaatcgccgccttggccgtaaagaagaagtt
ggctctggcgtactggataaagatgacattcttgatgtcatgaaaactttgatcgatatc
cgcaacggtaaaggtattgttgatgatatcgaccatttaggtaaccgccgtattcgctct
gttggtgagatggcagaaaaccagttccgcgtcggccttgtacgtgtagaacgcgcggtc
cgcgagcgtctgagcatggctgaatctgatggtttgatgcctcaagatttaataaatgct
aagccagtggctgctgcagtgaaagagttctttggctcttcacagttgtcgcagtttatg
gatcaaaacaacccgttgtcagaagttactcataagcgtcgtgtatctgcattgggcccc
ggcggtttgacgcgtgaacgtgcaggcttcgaggttcgtgacgttcacccaacgcactac
ggtcgtgtatgtcctatcgaaacgccagaggggccaaacattggtttgatcaactccttg
gcaacatttgcgcgcacaaacgattatggtttccttgagacgccataccgtaaagtggtt
gatggtgttgttactgacgatatcgaatacttgtcagcgattgaagagaacaaatatgtc
atcgcgcaggcttcggccttgatggatgagaaccgtcgtttaactgatgagctggttgcg
gttcgtcaccagaacgaatttacggtaatgacgcctgatcgcgttgacttcatggacgtt
tcaccacgtcaggttgtatctatagcggcctctttgattccgttccttgagcatgacgat
gctaaccgtgcattgatgggttcaaacatgcagcgtcaggctgttccaacactgcgtgct
gataagccggtagttggtacgggcatggagcgctatgttgctcgtgactcgggtgtatgt
atcaccgctaaacgtggtggagttatcgaatctgttgatgctgcacgtattgttgtgcgt
gtgaatgatgatgaagtgacagcgggtgatgcgggtgttgatatttacacgctgaccaag
tacacgcgttctaaccagaatacttgtattaaccagcgttcgattgtccgccagggcgaa
gtggtaagccgcggtgatatcatggcggatggtccatcagttgatatgggtgagctggcg
ttaggccagaacatgcgcatcgccttcatgccttggaatggttacaacttcgaagactcg
atccttatctcggagcgtgttgttcaggaagatcgtttcacaacgattcatattcaggaa
ctgacctgtgtggcgcgtgataccaaattgggatctgaggaaattacttccgatattcca
aatgtgggagagtctgcactggccaaactggatgagtccggtattgtgcatattggtgcg
gaagttggccctggagatatccttgtcggtaaggttacaccgaagggagaaactcagctg
actccagaagagaaactgctacgtgcgatctttggtgagaaagcgtctgatgtaaaagat
acctctttgcgcgttaaaggtggtacgaccggtaaagttattgatgtacaggtctttact
cgtgatggtgttcaaaaagatgagcgtgctctctcgattgaaaaagccgagatggatgct
attcgtaaagacttaaatgacgaatatcgcattgttgagcaagcaacttatgagcgctta
gcaaaagtgttggttggcctcaaggctgatggtggtgctggcttgaagaaaggcgaagag
atcacagacgctttcttaggtgaaattaagaaagatgagtggttcaagattcgcgtatct
gacgatgccgtttctgagcagttagagcaagcacaagcgcaattgctagaacgtcgtgaa
gagcttgataagaaattcgaagataaaaaacgtaagcttcagacaggcgatgatcttgcg
ccaggcgttcttaagatcgttaaggtttatgtggcaacaaaacgccgcgtacagcctggt
gataagatggcgggccgccacggtaacaaaggtgttatctcggtcattatgcctgtagaa
gatatgccttacgacgaaaatggtgagccagtagatatagtgctgaacccgctgggtgta
ccatcgcgtatgaacgttggtcagattctagaaacgcatatgggtgcagccgcaaaaggc
ctgggtcgtaagatcaatggcatgttggaagtcgagcgcgaaaaggcagaaacggtcaaa
gagattcgtgaattcctgcacaaaatctataactcagagctagacggctgggagtcttct
cgtaaagaagatctggatagtttctctgatgatgagattatggagttagcgcgcaatctg
tgcggtggtgttccattagcaacgcctgcatttgacggtgcgaaagaagcagaaatcaaa
gagcttttacgtctggctgacatgaatgatagtggtcaggtaacgctgtttgatggtcgt
accggtgatcagtttgagcgtcaggtgactgttggttacatgtacatgctcaagcttaac
cacttggtggatgacaaaatgcatgctcgttctaccggttcttatagcttggttactcag
cagccgctgggcggtaaggctcaattcggtggtcagcgcttcggtgagatggaagtgtgg
gcactagaagcttatggagccgcttatacattgcaggagatgttaaccgtgaagtcggat
gacgttaatggccgtaccaaaatgtataagaatatcgttgatggcgaccacagaatggag
ccgggaatgccggaatcattcaacgtattgatcaaagagatccgctctttgggtatcgat
atcgagcttgagaacgactaa
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