Neisseria cinerea: NCTC10294_00297
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Entry
NCTC10294_00297 CDS
T06828
Symbol
ligA_1
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ncz
Neisseria cinerea
Pathway
ncz03030
DNA replication
ncz03410
Base excision repair
ncz03420
Nucleotide excision repair
ncz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ncz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCTC10294_00297 (ligA_1)
03410 Base excision repair
NCTC10294_00297 (ligA_1)
03420 Nucleotide excision repair
NCTC10294_00297 (ligA_1)
03430 Mismatch repair
NCTC10294_00297 (ligA_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ncz03032
]
NCTC10294_00297 (ligA_1)
03400 DNA repair and recombination proteins [BR:
ncz03400
]
NCTC10294_00297 (ligA_1)
Enzymes [BR:
ncz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NCTC10294_00297 (ligA_1)
DNA replication proteins [BR:
ncz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NCTC10294_00297 (ligA_1)
DNA repair and recombination proteins [BR:
ncz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NCTC10294_00297 (ligA_1)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCTC10294_00297 (ligA_1)
MMR (mismatch excision repair)
DNA ligase
NCTC10294_00297 (ligA_1)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NCTC10294_00297 (ligA_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
BRCT_2
E1-E2_ATPase
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
SQF82870
LinkDB
All DBs
Position
1:complement(292668..295163)
Genome browser
AA seq
831 aa
AA seq
DB search
MNPTAQHIRRLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALELNHPELKLPDSPTQ
RVGGEPLAGFAEVRHEVPMLSLTNAFSPQDGNGVFDHAEMYAFDQRVRDGLNGGNPEYII
EPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTQNVKTVANIPLRLHGENTPELIEVRG
EVLMQKADFAALNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVARQQG
GFVAEEHIQELAYFQELGFSLPNGNFGCFKNIDEVLAFYEQMQQKRPALPYEIDGMVVKV
NSLAQQRELGFISRAPRWAIAHKFPAEEALTVVEAIDVQIGRTGAVTPVARLQPVFVGGV
TVTNATLHNQDEVSRKDVRIGDTVVVRRAGDVIPEVVRVIFERRPMQETDVTGLSDGIKY
QQDDLFAEAPAVNQTQSVPLHKPYRLPTHCPICHSEIEREEGEAVARCSGGMLCQAQRAQ
GLIHFASRKAMDIDGLGQKQIEQLVAQDLVRHFADLYRLDIPTLQKMKETADKASSENEN
SDAETVSVDPSESNTQNGKKQPTKWAENILAGIEASKTPELARFLFALGIRHVGERTAKT
LAQAFGSLEHVRCAPEPILACLPDIGTVVARSIAHFFTQDAQQAMIDELLAAGVAPQTQA
VTIPPARHAEPQRWIARLPGFKISENKAQALWELAGKSIEGLQTDKALPADWQAWHSEPQ
NAALLENLKTFFSQTPSKNQEETVSECAASPWDCLNEAVAGKTFVLTGTLPTLKRDHAQA
LIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLTLLG
NT seq
2496 nt
NT seq
+upstream
nt +downstream
nt
atgaacccgaccgcacaacacatccgccgcctcaccgacctccttaaccgctacgcctac
gaatactacaccctcgacgcgcccagcgtacccgatgccgaatacgacaaattattccgc
gaactcgaagcgttggagttaaaccatcccgagctcaaactgcccgacagtccgacccag
cgcgtcggcggcgagcctttggcgggatttgccgaagtgcgccacgaagtgccgatgctg
tcgctgaccaacgccttctccccgcaagatggaaacggcgtgttcgaccatgccgaaatg
tacgctttcgaccaacgcgtgcgcgacggcttgaacggcggcaatcccgaatacattatc
gaacccaaattcgacggcctcgccatcagcctgctctaccgcgacggcgtattggtgcag
gcggcaacacgcggcgacggtaccacaggcgaagacgttacccaaaacgtcaaaaccgtc
gccaacattcctctgcggctgcacggcgaaaatacgcccgaactcatcgaagtacgcggc
gaagtgctgatgcaaaaagccgattttgccgctctcaataaacgccaagccgaaaacggg
caaaaaccctttgccaatccgcgcaacgccgccgccggcagcctgcgccaactcgattcg
cgtattaccgcgcaacgcaaactgcactttttcccctactccgtcgcccgccagcaaggc
ggtttcgtcgcggaagaacacatccaagaactcgcctatttccaagaactcggcttcagc
ctgcctaacggcaatttcggctgtttcaaaaatatcgacgaagtattggcattttacgaa
caaatgcagcaaaaacgccccgccctaccctacgaaatcgacggcatggtggtcaaagtc
aacagcttggcgcaacagcgcgaactcggcttcatctcccgcgcgccgcgctgggcaatt
gcccacaaattccccgccgaagaagccctgaccgtcgtcgaagccatagatgtacaaatc
gggcgcaccggcgcggttacccccgtcgcccgcctgcaacccgtattcgtcggcggcgtc
accgtaaccaacgccaccctgcacaatcaggacgaagtatcgcgcaaagacgtgcgcatc
ggcgataccgtcgtcgtgcgccgtgccggagacgtgattcccgaagtcgtgcgcgtgatt
ttcgaacgccgcccgatgcaggaaaccgacgttacgggactttcagacggcatcaaatac
caacaagatgacctgtttgccgaagcaccggctgtaaaccaaacccaatccgttccgctc
cacaagccctaccgcctgccgacccattgccccatctgccacagcgaaatcgaacgcgaa
gaaggcgaagccgtcgcccgatgcagcggcggcatgctttgtcaggcgcaacgcgcgcaa
ggcttaatccacttcgcctcgcgcaaagcgatggacatcgacggactcggtcaaaaacaa
atcgagcagctggtcgcccaagacctcgtccgccacttcgccgacctctaccgtctcgac
atcccgaccttgcaaaaaatgaaggaaacggcggataaagcgtcgtctgaaaacgaaaac
agcgacgcagaaacggtttcagtcgacccatctgaatccaatacccaaaacggcaaaaaa
cagccgaccaagtgggcggaaaacatcctcgcaggcatagaagccagcaaaacacctgaa
ctcgcccgcttcctgttcgcgctcggcatccgacacgtcggcgaacgtaccgccaaaaca
ctagcacaggcattcggatcgctggaacacgtccgctgcgcgcccgaacccattctcgcc
tgcctacccgacatcggcaccgtcgtcgcccgctccatcgcccacttcttcacccaagac
gcgcagcaggcgatgatagacgagctgctcgccgcaggcgttgccccgcaaacccaagcc
gttaccatcccgcccgcccgccacgccgagccgcaacgctggattgcccgcctgcccggt
ttcaaaatcagcgaaaacaaagcccaagccttatgggaactcgccggcaaaagcatagaa
ggcctgcaaaccgacaaagccctccctgccgactggcaggcgtggcacagcgaaccacaa
aacgctgccctgctcgaaaacctgaaaaccttcttctctcaaacaccgtctaaaaatcaa
gaagaaacagtttcagagtgcgcagcctccccgtgggactgcctcaatgaagccgtagca
ggcaaaaccttcgtattaaccggcaccctgcccaccctcaaacgcgaccacgcccaagcc
ctaatcgaagctgcaggcggcaaagtttccggcagtgtttccaaaaaaaccgattacgtc
gtcgccggagaagccgcaggcagcaagctggaaaaagccaatgccttgggcgtttccgtc
ctcagcgaagccgaactgcttaccctgctcggctga
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