KEGG   Neisseria cinerea: NCTC10294_00297
Entry
NCTC10294_00297   CDS       T06828                                 
Symbol
ligA_1
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
ncz  Neisseria cinerea
Pathway
ncz03030  DNA replication
ncz03410  Base excision repair
ncz03420  Nucleotide excision repair
ncz03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ncz00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    NCTC10294_00297 (ligA_1)
   03410 Base excision repair
    NCTC10294_00297 (ligA_1)
   03420 Nucleotide excision repair
    NCTC10294_00297 (ligA_1)
   03430 Mismatch repair
    NCTC10294_00297 (ligA_1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ncz03032]
    NCTC10294_00297 (ligA_1)
   03400 DNA repair and recombination proteins [BR:ncz03400]
    NCTC10294_00297 (ligA_1)
Enzymes [BR:ncz01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     NCTC10294_00297 (ligA_1)
DNA replication proteins [BR:ncz03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     NCTC10294_00297 (ligA_1)
DNA repair and recombination proteins [BR:ncz03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     NCTC10294_00297 (ligA_1)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     NCTC10294_00297 (ligA_1)
   MMR (mismatch excision repair)
    DNA ligase
     NCTC10294_00297 (ligA_1)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      NCTC10294_00297 (ligA_1)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD PTCB-BRCT HHH_5 BRCT_2 E1-E2_ATPase 5_3_exonuc
Other DBs
NCBI-ProteinID: SQF82870
LinkDB
Position
1:complement(292668..295163)
AA seq 831 aa
MNPTAQHIRRLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALELNHPELKLPDSPTQ
RVGGEPLAGFAEVRHEVPMLSLTNAFSPQDGNGVFDHAEMYAFDQRVRDGLNGGNPEYII
EPKFDGLAISLLYRDGVLVQAATRGDGTTGEDVTQNVKTVANIPLRLHGENTPELIEVRG
EVLMQKADFAALNKRQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVARQQG
GFVAEEHIQELAYFQELGFSLPNGNFGCFKNIDEVLAFYEQMQQKRPALPYEIDGMVVKV
NSLAQQRELGFISRAPRWAIAHKFPAEEALTVVEAIDVQIGRTGAVTPVARLQPVFVGGV
TVTNATLHNQDEVSRKDVRIGDTVVVRRAGDVIPEVVRVIFERRPMQETDVTGLSDGIKY
QQDDLFAEAPAVNQTQSVPLHKPYRLPTHCPICHSEIEREEGEAVARCSGGMLCQAQRAQ
GLIHFASRKAMDIDGLGQKQIEQLVAQDLVRHFADLYRLDIPTLQKMKETADKASSENEN
SDAETVSVDPSESNTQNGKKQPTKWAENILAGIEASKTPELARFLFALGIRHVGERTAKT
LAQAFGSLEHVRCAPEPILACLPDIGTVVARSIAHFFTQDAQQAMIDELLAAGVAPQTQA
VTIPPARHAEPQRWIARLPGFKISENKAQALWELAGKSIEGLQTDKALPADWQAWHSEPQ
NAALLENLKTFFSQTPSKNQEETVSECAASPWDCLNEAVAGKTFVLTGTLPTLKRDHAQA
LIEAAGGKVSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLTLLG
NT seq 2496 nt   +upstreamnt  +downstreamnt
atgaacccgaccgcacaacacatccgccgcctcaccgacctccttaaccgctacgcctac
gaatactacaccctcgacgcgcccagcgtacccgatgccgaatacgacaaattattccgc
gaactcgaagcgttggagttaaaccatcccgagctcaaactgcccgacagtccgacccag
cgcgtcggcggcgagcctttggcgggatttgccgaagtgcgccacgaagtgccgatgctg
tcgctgaccaacgccttctccccgcaagatggaaacggcgtgttcgaccatgccgaaatg
tacgctttcgaccaacgcgtgcgcgacggcttgaacggcggcaatcccgaatacattatc
gaacccaaattcgacggcctcgccatcagcctgctctaccgcgacggcgtattggtgcag
gcggcaacacgcggcgacggtaccacaggcgaagacgttacccaaaacgtcaaaaccgtc
gccaacattcctctgcggctgcacggcgaaaatacgcccgaactcatcgaagtacgcggc
gaagtgctgatgcaaaaagccgattttgccgctctcaataaacgccaagccgaaaacggg
caaaaaccctttgccaatccgcgcaacgccgccgccggcagcctgcgccaactcgattcg
cgtattaccgcgcaacgcaaactgcactttttcccctactccgtcgcccgccagcaaggc
ggtttcgtcgcggaagaacacatccaagaactcgcctatttccaagaactcggcttcagc
ctgcctaacggcaatttcggctgtttcaaaaatatcgacgaagtattggcattttacgaa
caaatgcagcaaaaacgccccgccctaccctacgaaatcgacggcatggtggtcaaagtc
aacagcttggcgcaacagcgcgaactcggcttcatctcccgcgcgccgcgctgggcaatt
gcccacaaattccccgccgaagaagccctgaccgtcgtcgaagccatagatgtacaaatc
gggcgcaccggcgcggttacccccgtcgcccgcctgcaacccgtattcgtcggcggcgtc
accgtaaccaacgccaccctgcacaatcaggacgaagtatcgcgcaaagacgtgcgcatc
ggcgataccgtcgtcgtgcgccgtgccggagacgtgattcccgaagtcgtgcgcgtgatt
ttcgaacgccgcccgatgcaggaaaccgacgttacgggactttcagacggcatcaaatac
caacaagatgacctgtttgccgaagcaccggctgtaaaccaaacccaatccgttccgctc
cacaagccctaccgcctgccgacccattgccccatctgccacagcgaaatcgaacgcgaa
gaaggcgaagccgtcgcccgatgcagcggcggcatgctttgtcaggcgcaacgcgcgcaa
ggcttaatccacttcgcctcgcgcaaagcgatggacatcgacggactcggtcaaaaacaa
atcgagcagctggtcgcccaagacctcgtccgccacttcgccgacctctaccgtctcgac
atcccgaccttgcaaaaaatgaaggaaacggcggataaagcgtcgtctgaaaacgaaaac
agcgacgcagaaacggtttcagtcgacccatctgaatccaatacccaaaacggcaaaaaa
cagccgaccaagtgggcggaaaacatcctcgcaggcatagaagccagcaaaacacctgaa
ctcgcccgcttcctgttcgcgctcggcatccgacacgtcggcgaacgtaccgccaaaaca
ctagcacaggcattcggatcgctggaacacgtccgctgcgcgcccgaacccattctcgcc
tgcctacccgacatcggcaccgtcgtcgcccgctccatcgcccacttcttcacccaagac
gcgcagcaggcgatgatagacgagctgctcgccgcaggcgttgccccgcaaacccaagcc
gttaccatcccgcccgcccgccacgccgagccgcaacgctggattgcccgcctgcccggt
ttcaaaatcagcgaaaacaaagcccaagccttatgggaactcgccggcaaaagcatagaa
ggcctgcaaaccgacaaagccctccctgccgactggcaggcgtggcacagcgaaccacaa
aacgctgccctgctcgaaaacctgaaaaccttcttctctcaaacaccgtctaaaaatcaa
gaagaaacagtttcagagtgcgcagcctccccgtgggactgcctcaatgaagccgtagca
ggcaaaaccttcgtattaaccggcaccctgcccaccctcaaacgcgaccacgcccaagcc
ctaatcgaagctgcaggcggcaaagtttccggcagtgtttccaaaaaaaccgattacgtc
gtcgccggagaagccgcaggcagcaagctggaaaaagccaatgccttgggcgtttccgtc
ctcagcgaagccgaactgcttaccctgctcggctga

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