KEGG   Candidatus Nitrosotalea devanaterra: NDEV_0787Help
Entry
NDEV_0787         CDS       T04889                                 

Gene name
lig
Definition
(GenBank) DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
ndv  Candidatus Nitrosotalea devanaterra
Pathway
ndv03030  DNA replication
ndv03410  Base excision repair
ndv03420  Nucleotide excision repair
ndv03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ndv00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    NDEV_0787 (lig)
   03410 Base excision repair
    NDEV_0787 (lig)
   03420 Nucleotide excision repair
    NDEV_0787 (lig)
   03430 Mismatch repair
    NDEV_0787 (lig)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ndv03032]
    NDEV_0787 (lig)
   03400 DNA repair and recombination proteins [BR:ndv03400]
    NDEV_0787 (lig)
Enzymes [BR:ndv01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     NDEV_0787 (lig)
    6.5.1.6  DNA ligase (ATP or NAD+)
     NDEV_0787 (lig)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     NDEV_0787 (lig)
DNA replication proteins [BR:ndv03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    NDEV_0787 (lig)
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     NDEV_0787 (lig)
DNA repair and recombination proteins [BR:ndv03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     NDEV_0787 (lig)
   NER (nucleotide excision repair)
    Other NER factors
     NDEV_0787 (lig)
   MMR (mismatch exicision repair)
    Other MMR factors
     NDEV_0787 (lig)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Motif
Other DBs
NCBI-ProteinID: CUR51552
UniProt: A0A128A2J3
LinkDB All DBs
Position
1:complement(708733..710499)
Genome map
AA seq 588 aa AA seqDB search
MKFSLVADTLSYMENTTKRLELTQHLVDLFKITPPDIIPKVVYLLQGKLRPDHEGVEIGI
AEKIAIKALSKSSGISIRKIEDEYKDTGDFGQVASKILEQKTQTTFLSENITVERVYETL
YKIAELKGARSQDMKMKYISSLLNDATPTEGGFIAKIITSNLRLGIADYTILDALSIAYT
GSKENRPALEHAYNVCSDLGKVSFAVSKNGLDALRDFQVTIFSPIRPMLAERVKSPQEAH
EKMGLEFASEYKLDGERVQVHRQGEKIVLYSRSLENITSYYPDIVENIGKALKSDEIILE
AEAVAINDDTGEFLPFQELMHRRRKYKIAQAVQEYPITVNFFDVLLVDKKSCLDLSYAER
RKLLEKNVTEDTFAKVMPMVLVKSDSEVEDSLENAINSGCEGIMLKQLDSPYRAGARANN
WLKLKREYRNELGDSLDLVVVGAFYGRGRRTGRYGALLLSAYDTEADMFPSICKVGTGFT
DESLDQFYQILADKITVKKDPRIQSGLEADVWFDPEVVIEIVASEITLSPIHKVAMDKIR
KGSGLALRFPKFTGKIRFEKTSENATNIEEILTLYNSQKRVVQDEKIN
NT seq 1767 nt NT seq  +upstreamnt  +downstreamnt
atgaaattttcccttgttgcagatacgctaagttacatggaaaataccacaaagagatta
gagcttacacaacatctagtagatctttttaaaattacaccgccggatataataccaaaa
gttgtctacttgctccaaggaaaactacgacctgaccacgagggagtagaaattggcatt
gcagaaaagattgcaataaaagcactatcaaaatcatctggaatttcaattagaaaaatt
gaggacgagtacaaagataccggagactttgggcaagtggcatcaaagatactagagcaa
aaaacccagacaacttttttgagtgaaaacattacagtcgagcgagtctatgagacacta
tacaaaattgcagaattaaaaggcgcaaggtcacaagacatgaagatgaagtacatctca
agcctgctaaatgatgccacgccaacagagggtggatttattgcaaaaataataacatca
aatcttaggcttggaattgcagactatacaatacttgatgcgctatccattgcatatact
ggttccaaagaaaacagaccagcacttgagcacgcgtataatgtctgcagtgacttgggc
aaagtttcatttgcagtatcaaaaaatggactagacgccctaagagattttcaagttacc
atattcagcccgattcgaccaatgcttgctgaaagggtaaagagtccgcaagaggcccat
gaaaaaatgggactagagtttgcatcagagtacaagcttgacggcgagcgagtccaggtc
cacagacagggagaaaaaattgttttgtattctcgcagccttgaaaacataacaagctac
tatccagatattgtagaaaacatcggcaaggcgttaaagtctgatgaaattattttagaa
gcagaagctgttgcaataaacgatgacactggcgagtttttaccattccaggaattgatg
catcgtagacgaaaatacaaaattgcccaagcagtacaagaatatccaatcactgtaaac
ttttttgatgttttactggtggataagaaaagttgccttgacttgtcatatgcagaaaga
agaaaactgttggagaaaaacgtaacagaggatacttttgccaaagtcatgccaatggtt
ctggtaaaatcagacagcgaagttgaagacagtttggaaaatgcaataaattctggatgt
gagggaataatgctaaagcagttagactcgccatatcgtgcaggtgcaagggcaaacaac
tggctcaagctcaagcgagagtatagaaacgagcttggagacagcctcgacttggtggta
gtgggtgcattttatggaagaggtagaaggactgggaggtatggcgctttgttgctgtct
gcatatgacaccgaggcagacatgtttccaagtatttgcaaagtcggtacaggctttaca
gatgagagcctagaccagttttatcaaattcttgcagataagataactgtcaaaaaagac
cccagaatccagagtggacttgaggcagatgtgtggtttgatccagaagttgtaatagag
atagtggcatcagagataaccctcagtccaatccacaaagttgccatggacaaaatcaga
aaaggtagtggacttgcattacggtttccaaagtttacaggaaagataagatttgaaaaa
acatcggagaacgcaaccaacattgaagaaatactaactttgtataacagccaaaaacgt
gttgtgcaagacgaaaaaataaactag

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