KEGG   Neorhizobium sp. NCHU2750: NCHU2750_58310Help
Entry
NCHU2750_58310    CDS       T05650                                 

Gene name
ligD
Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
nen  Neorhizobium sp. NCHU2750
Pathway
nen03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:nen00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    NCHU2750_58310 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:nen03400]
    NCHU2750_58310 (ligD)
Enzymes [BR:nen01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     NCHU2750_58310 (ligD)
DNA repair and recombination proteins [BR:nen03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     NCHU2750_58310 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M RNA_ligase DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: AYD05199
UniProt: A0A386EDW4
LinkDB All DBs
Position
pNCHU2750d:91131..93770
Genome map
AA seq 879 aa AA seqDB search
MTTRLSTYHSKRDFQKTTEPYGTVEVRPSKRLRFVIQKHDATRLHYDLRLELDGVFKSWA
VTRGPSLDPADKRLAVEVEDHPLDYGDFEGTIPKGEYGGGTVMLWDRGYWEPDGDISPEQ
ALKKGDLKFVLDGDRLKGSFVLVRMKKDRDGGKRTNWLLIKHHDDTAVNGNGDVILERKK
TSVASGRAMSAIASGRGRKPKPFMLTAPAVPADAVWDSSEGLAAEERKKTEKGAAPRCSR
KGEGAMPPFIPPQLCRSEDRPPSGKGWLHEIKFDGYRVQMRIEGGTVHLLTRKGLDWTKR
FKQIAADASDLADAIIDGEVCALDENGAPDFASLQAALSEGKTESLVFFAFDLLFEGGDD
LRDQPLKARKFRLETLLKNADAGERLRFVDHFETGGDAVLRSACRLSLEGIVSKKVDAPY
RSGRSDSWVKSKCRAGHEVVIGGYATNGDTFRSLLAGVYRDDHFVYVGRVGTGFGAGRAA
MLTEKLQPLLTTRSPFTGIGAPKKTAEIHWVKPELVAEIQFAGWTADEQVRQGAFKGLRE
DKPAHEVTTERPSSPDHETPEPDAAPDATSRQRSPPKQSRKNAKAEVMGVLISHPDKALW
SDTDPPVTKQDLALYFEAVGPWLIEHVRGRPCSVVRAPDGVGHQQFFQRHAMPGTSNLLE
LVKVSGDRKPYLQIDRVEGLADLAQAGALELHPWNCIPDKPEVPGRLVFDLDPGPGVEFD
TVVEAARELRDRLDKLGLVGFCKTTGGKGLHVVVPLKAARGKSPGWDEAKEFARRLCEQM
AQEKPDLYLIKMAKKLRNGRIFLDYLRNDRMATAVAPLSPRARPGASVSMPLTWSQVKVG
LDPMKFTVRSVPSLLKKSEAWADYDSSARSLAAAIRTLR
NT seq 2640 nt NT seq  +upstreamnt  +downstreamnt
atgacgacgaggctctccacctatcatagcaagcgcgacttccaaaagacgacggagccg
tacgggaccgtggaggtccgcccctcgaagcgcttgcggttcgtcatccagaagcacgac
gcgacccggctgcactatgacctcaggctggaactcgacggcgtcttcaagtcctgggcc
gtcacccgcggtccttctctggatccggcggacaagcgcctcgcagtcgaggtcgaggac
catccactcgactacggcgacttcgaaggcacgatccccaagggagagtatggcggcggg
acggtcatgctttgggaccgcggctactgggagccggatggcgatatttccccggagcaa
gccttgaagaagggcgacctgaagttcgtcctcgacggtgaccgcctaaagggcagcttc
gtactcgtccggatgaagaaggaccgcgacgggggcaagcgtacgaactggctcctcatc
aagcatcatgacgataccgcggtgaatggaaacggtgatgtcatccttgagcggaagaaa
acgtcggtcgcgtctggtcgggccatgtcagccatcgcttcgggcagaggtcggaaaccg
aaaccgttcatgctgacggcccctgccgttccagccgacgccgtctgggacagcagcgag
ggactggcagcggaggagcgcaagaaaactgagaagggtgccgcgccccgatgctcgcgg
aagggcgaaggcgcgatgccgccgttcatcccgccgcagctctgcaggtcggaggaccgg
ccgccgtcgggcaagggatggctgcacgagatcaagttcgacgggtacagggttcagatg
cgcatcgagggcggcaccgtccacctgctgacccgcaaggggctggactggacgaagcgc
ttcaagcagatcgccgccgatgccagcgacctagccgatgccatcatcgacggcgaggtc
tgcgcactcgacgagaacggcgcgccggacttcgccagccttcaggcggccttgtcggag
ggcaagacggaaagcctggtcttcttcgccttcgatctcctgttcgagggaggcgacgac
cttcgcgaccagccgctgaaggcgcggaaattcaggctggagacactgttgaaaaacgca
gatgcaggagagcgtctcaggttcgtcgatcatttcgagaccggtggcgacgccgttctt
cgttccgcctgtcgcctctcgctggagggcatcgtctcgaagaaggtcgacgcgccctat
cggtcgggtcggagcgatagctgggtaaagtcgaaatgccgggccggtcatgaagttgtc
atcggcggatatgccaccaatggcgatacgttcaggtcgcttctggcaggcgtctaccgc
gacgatcacttcgtctatgtcggccgtgtcggcacaggtttcggtgcgggcagggcggca
atgctgacggagaagctgcagccgctgctcaccacccggtcgcccttcacagggataggc
gcaccgaagaagaccgccgagatccactgggtcaaaccggaactcgtcgccgaaattcag
ttcgccggctggaccgccgacgaacaggttcgccaaggcgccttcaaaggtctgcgggaa
gacaagcccgcacatgaagtgacgacggagcggccctcatctcctgatcacgaaacgccg
gaaccggacgccgcgcctgatgcgacatccaggcagagatcacctccgaagcaatcccgg
aagaacgccaaggccgaggtcatgggcgtcctaatttcccatccggacaaggccctgtgg
agcgacaccgatccgcctgtcaccaagcaagacctcgctctctatttcgaggcggtcggt
ccgtggctgatcgaacatgtccgcggaagaccgtgttccgtcgtccgagcgcccgatggt
gtcggccatcagcagttcttccagcggcatgcgatgcccggaacttccaacctgctcgag
ctcgtgaaagtctccggagatcgcaagccgtacctgcagatcgaccgcgtcgaaggactg
gccgatctcgcgcaggcgggtgcgctcgaactgcatccgtggaattgcattcccgacaag
cctgaagttccagggagactggtcttcgatctcgatccgggacccggcgtcgaattcgac
acggtcgttgaagccgcccgcgagcttcgtgacaggctcgacaagctcgggctggttggc
ttctgcaagacgacaggtggcaagggcctgcatgtcgtcgtaccgctcaaggcagccaga
ggaaagtcgcccggatgggacgaggcgaaggaatttgctcgccgtctctgcgaacagatg
gcgcaggagaagccggacctttatctgatcaagatggcgaagaagctgcgcaacggccgc
atcttcctcgactatctgcgcaacgacaggatggcgaccgcggtcgcgccgctgtccccg
cgcgccagacccggcgcatcggtttcgatgcccctgacctggtcacaggtgaaggtcggc
ctcgatccaatgaagttcacggtgcggagcgtgccgtcattgctgaagaagagcgaagca
tgggcggactatgacagctccgcgaggtcgctcgccgccgcgatcagaacgctacgctaa

DBGET integrated database retrieval system