KEGG   Neorhizobium sp. SOG26: CYG48_19460Help
Entry
CYG48_19460       CDS       T05626                                 

Gene name
ligD
Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
neo  Neorhizobium sp. SOG26
Pathway
neo03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:neo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    CYG48_19460 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:neo03400]
    CYG48_19460 (ligD)
Enzymes [BR:neo01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CYG48_19460 (ligD)
DNA repair and recombination proteins [BR:neo03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     CYG48_19460 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M CTK3_C
Motif
Other DBs
NCBI-ProteinID: AXV17960
UniProt: A0A346YU13
LinkDB All DBs
Position
unnamed2:616551..619187
Genome map
AA seq 878 aa AA seqDB search
MTNNLTSYRAKRDFEKTSEPSGETAVNPSNRRRFVIQKHDATRLHYDLRLELDGVFKSWA
VTKGPSLNPHDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPESQRSPEE
ALKKGDFKFVLEGDRLHGSFVLVRMRNDRERSKRTNWLLIKHHDDFSVEEHGEAILEENM
TSVASGRSMEQIAGGKGRKPKPFMLKAGQVEADAVWDSKTGLAADQRKTKSGPSAKAKKN
KSVVIPEFVAPQLCQTSNRPPSGKNWLHEIKFDGYRIQIRVADGEVTLKTRKNLDWTSRY
PEIAEAASGLPDCLIDGEICALDSSGAPDFAALQAALSEKKTNDLVFFAFDILFDGEEDL
RPLPLTDRKQRLQAILEDVENATRLRFVEHFETGGDAVLRSACKLSLEGIVSKQADAPYV
SGRTETWVKSKCRAGHEVVIGGYATTNGKFRSLLVGVFRGDHFVYLGRVGTGFGAAKLKT
LVPKFEAMRTTKSPFTGAGAPKKAKEIVWVKPELVAEIEFAGWTADGLVRQAAFKGLRED
KPAMDAKTDEPAPLEDKDAKAPKPSKRAGRLKNAKAEVMGVLISNPDKALWPEAGDGKPV
TKEELAQYHEVVGEWLINHIKGRPCSIIRAPDGIGGEQFFQRHAMPGTSNLLELVKVFGD
KKPYLQVDRVEGLAAIAQIGGVELHPWNCEPGQPEVPGRLVFDLDPAPDVAFYDVVAAAR
EMRDRLDELGLVSFCKTTGGKGLHVVTPLKVNKRKPLAWADAKAFAHDVCQAMAQDSPDR
YLIKMTKSLRNGRIFLDYLRNDRMATAVAPLSPRARPGATVSMPLTWSQVKAGLDPKRFT
IRTVPALLAKTSAWQDYCDGERPLEQAIKRLGKASKAA
NT seq 2637 nt NT seq  +upstreamnt  +downstreamnt
atgacaaacaacctcacctcctatcgcgccaagcgtgatttcgagaagacaagcgaacca
agcggcgaaactgcggtcaatccgtcgaaccgccgtcgcttcgtcattcagaagcatgat
gccacccggcttcattatgacctcaggctggagctcgatggtgtcttcaaatcttgggcg
gtcaccaaaggtccttcgctcaacccgcacgacaagcgcctcgccgtggaggtagaggat
catccgctggattacggtgacttcgaaggcactattccgaagggccagtatggcggtggc
accgtgatgttgtgggaccgcggttactgggaacccgaaagccagaggtcaccggaagaa
gcgctgaagaagggcgacttcaagttcgtgctagaaggcgaccgcctgcatggcagcttc
gtgctggtcaggatgcgcaatgacagggagaggagcaaacgcaccaactggctccttatc
aagcaccacgatgacttttccgtggaagagcatggtgaagcaatccttgaggagaacatg
acgtccgtcgcgtccggccgcagcatggagcaaatcgccggtggcaaggggcgcaagccg
aagcccttcatgctgaaggcgggtcaagtggaggcggacgccgtctgggacagcaagacc
gggctcgcggccgaccaacgaaaaacgaagtcgggtccaagtgccaaagccaagaaaaac
aaatccgttgtcattccggagttcgtcgcaccgcaattgtgccagacttccaatcggcca
ccatcgggcaagaactggctgcacgagatcaagttcgatggctaccgtatccagatccgg
gtggcggatggtgaggttacgctgaagacgcgcaaaaacctggactggacgagccgatat
cccgaaatcgccgaggctgcgagcggtctgccagactgcctgattgatggtgaaatctgc
gccctggattcaagtggcgcgcctgatttcgctgcgttgcaggctgccctatctgagaaa
aagacgaacgatctggtatttttcgccttcgacatcctgttcgatggtgaggaggacctg
cgtcctctgccgctgactgacagaaagcaacgcctgcaggcgatattggaggatgtcgag
aacgccacgcgtctgcgatttgtagagcattttgagaccggtggtgatgcggttcttcgc
tcggcctgcaagctctcgctggaaggtatcgtttccaagcaagcggacgcgccttatgtg
tcaggccgaacggaaacctgggtcaagtccaaatgccgggccggccacgaggtcgtcatc
ggcggttacgccacgaccaacggcaagttccgttcgcttctggtgggtgtcttccgcggt
gaccactttgtttatctcggacgggttggaaccggttttggtgcggcgaagctcaaaacc
ctggtgccgaagttcgaagcgatgcgaacgacaaaatctcctttcaccggggcgggggcg
ccaaagaaggcgaaggagatcgtctgggtaaagcctgaactcgtcgcggagatcgagttc
gccggctggaccgcggacggtcttgtgcggcaggctgctttcaaaggcttgcgggaagac
aaacccgcgatggatgccaaaaccgatgagccggcaccgcttgaagacaaggatgccaag
gccccgaaaccgtcgaaacgagcaggtcgtctaaaaaatgcaaaggcggaggttatgggc
gtcctgatctcaaaccctgacaaggcattgtggcccgaagcgggagacgggaagcctgtt
accaaagaagaattggcccaatatcacgaggttgtcggcgagtggttgatcaatcacatc
aagggaaggccgtgctcaatcatccgtgcacccgacggaattggcggggagcagttcttc
cagcggcacgctatgccgggcacatccaacctgctcgaactggtgaaggtgtttggcgac
aagaaaccttacctgcaggtcgatcgggtcgagggccttgccgctatcgctcagatcggc
ggcgtcgagctgcatccctggaattgtgaaccggggcagccggaagtaccaggccgcctc
gtgttcgaccttgatcccgctccggacgtcgcattctatgatgttgttgccgcagcccgt
gagatgcgggatcgtctcgatgaattggggctcgtcagtttctgcaagacgacgggcggc
aagggcctccatgtcgtgaccccgctcaaggtcaacaaaaggaagccgctcgcctgggcc
gacgcaaaagcctttgcgcatgacgtgtgccaagccatggcgcaggacagcccggaccgc
tacctcatcaagatgaccaagagcctgcggaacgggcggatcttcctcgactatctgcgc
aacgatcgtatggccaccgccgtggcgccgctttcaccaagagcgcgtccgggagcaacc
gtgtccatgccgctgacttggagccaggtgaaagccggactggatcctaaacggttcacc
atcaggacagtgccggcgctgctggccaagacatctgcctggcaagactattgcgacggc
gaacggcctctcgagcaggcgatcaagaggctcggaaaggcaagcaaggcggcctag

DBGET integrated database retrieval system