Nitrosomonas europaea: NE1457
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Entry
NE1457 CDS
T00130
Name
(GenBank) Ribonucleases G and E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
neu
Nitrosomonas europaea
Pathway
neu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
neu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NE1457
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
neu03019
]
NE1457
03009 Ribosome biogenesis [BR:
neu03009
]
NE1457
Enzymes [BR:
neu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NE1457
Messenger RNA biogenesis [BR:
neu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NE1457
Ribosome biogenesis [BR:
neu03009
]
Prokaryotic type
rRNA processing factors
NE1457
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
CAD85368
UniProt:
Q82UM5
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All DBs
Position
1590529..1593090
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AA seq
853 aa
AA seq
DB search
MKRMLFNATQPEELRVAIVDGQKLIDIDIETLGKEQRKSNIYKAAVTRLEPSLEAAFVDY
GAGRHGFLPYKEIAPTCFDRNTDWSGHRVADLLREGQELIVQVDKDERGNKGAALTTYIS
LAGRYLVLMPNNPQGGGISRRVSAEERAELREVINNLQVPEGMSIIARTAGIGRNEEELQ
WDLNYLVQLWRAIEEAASNEKGVFLIYQESSLVIRAIRDYFHAEIGEILIDNPEIYEQAY
QFMANVMPANVDRLKLYQDDIPLFSRFQIEHQIETAYSRQVTLPSGGSIVIDHTEALVSI
DVNSARAIRGSDIETTALNTNLEAADEIARQLRLRDLGGLVVVDFIDMEVTRNQREVESS
LLKALRLDRARVQIGKISRFGLLELSRQRLRPSLGEGNYIPCPRCHGTGHIRGTDSSALH
ILRIIQEEAMKEQTSMLQVQLPVDVATFLLNEKRSEIYRLEARLKVGIILIPNIYMETPN
YTITRLRHEDIKSTELPPSYEMVEKTSEEVTLPSISQETRATRPKAAVTGIKPEQPAPVP
EEKPREQLSFLDKFFSLFRPAGSNRTETDQAAEESQTKPSRGERSRNRRDRGRSKRTKTS
TQVTANGSLQEAGHSSLLDHPVVVEHPVTDRATDNDRQHRKNGRQNPPQKLEVASDQLDV
STTPADTAATADSTSERKTEKRGRSRRRRGSLHRDREDQINLNTATGQDEVIPIGENETV
EPVVSSDDDSKDTENILLLPVEPVGDTSSTPTNDIIENQVTASAEIIETETIHTRGEPDS
EYQVTVEPHPHQTIELPDLAQSGLIMIETAPDKISETEEVPPAPSRRPRSRPRRSVEPAA
DNAEPLVQVETRD
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgttattcaatgcgacccagcctgaagagctgcgcgtcgccatcgtagat
gggcagaaactcatcgatatcgatatcgaaaccctgggcaaggaacaacgcaaaagtaat
atttataaagcagctgtcacccgcctcgaacccagtcttgaagccgccttcgtcgattac
ggcgccggccgtcatggtttcttgccttataaggaaattgctccaacctgcttcgacagg
aataccgactggtccggtcatcgtgtggccgacctgttacgtgaaggtcaggagctgatt
gtacaggttgacaaggatgagcgtggcaacaaaggtgctgccctcaccacttacatctct
ctggccgggcgttatctcgtcctgatgcccaacaacccgcagggtggcggtatttcacgc
cgagtgagcgcggaagagcgggcagaattacgtgaggtcatcaacaaccttcaggtacct
gaaggcatgagcatcattgcacgcaccgcaggtatcggacgcaatgaagaagaactgcaa
tgggatttgaactatctggtacagctctggcgtgccattgaagaggccgccagtaacgag
aaaggtgtcttcctgatttatcaggaaagcagccttgtgatccgtgccattcgtgattat
ttccacgcagaaatcggtgaaatcctgatcgataaccctgaaatatatgagcaggcatat
cagttcatggcaaatgtcatgccggcgaacgtggatcggttaaaactctatcaggatgat
attccactgttttcccgtttccagatcgaacaccagatcgagacggcctactcccgtcag
gttactctgccttcaggtggctcgattgtcattgaccataccgaggcactggtttccatc
gacgtcaattcagcacgtgccatacgtggttcagacatcgaaaccactgcgctcaacacc
aatctcgaggcagccgatgaaatcgcccggcaattgcgcctgcgtgatctgggcggactg
gtagtggtcgattttatcgatatggaagtcacccgcaatcaacgggaagtggaatccagt
ctgctcaaggcattgcgcctggatcgtgcacgcgtccagatcggtaaaatctcccgcttt
ggattactcgaattatcgcggcaacgactgcgaccctctctcggggaaggaaactatatc
ccttgtcctcgctgccatggtaccggccatattcggggaacggattcatccgctctgcat
attctcagaatcatccaggaagaagcgatgaaagagcagaccagtatgctgcaggtacag
ctgccagtggatgttgccacatttctgctgaacgagaaacgatcggagatatatcggctc
gaagcacgtctgaaagtcgggattatcctgatccccaacatctatatggagacgcccaac
tacacgattacccggttgcgccatgaagacatcaaatcaaccgaattaccgccaagttac
gaaatggtggaaaagacctccgaagaagtcacactcccctctatttcccaggagacccgg
gcaacccggcccaaagcagcggtaaccggtatcaagcccgagcaacccgcccccgttcct
gaagaaaaacctcgagaacagctttcattcctggacaaattcttcagtctgttcaggccg
gcaggcagcaaccggacagaaaccgatcaagctgcggaagaatctcagacaaaaccttct
cgcggtgaacgtagtcgcaaccggcgcgatcgcggccgcagcaaacgtacgaaaaccagt
acccaggtaacggcaaacggatcattgcaggaagcaggccattcgtcactgctcgatcac
cctgtagtagtagagcatcctgttaccgatcgtgctaccgacaatgatcggcaacatcgc
aaaaatggccgccagaatccgccgcagaagctcgaagtggcaagtgatcagctcgatgta
tcgacaacaccggcagatacagctgctacagcagactctaccagtgaaagaaaaacagaa
aaacgaggccgttcacgccgccgtcgtggaagtttgcatcgtgaccgggaagatcagata
aatctgaacacggccaccgggcaggatgaagtgataccaatcggagaaaatgaaacggtc
gaacccgttgtatcttctgatgatgacagcaaagataccgagaatatactcctgctcccg
gtggaaccagtcggggacaccagctcgactccgacaaacgatatcattgagaatcaggta
acagcgtccgccgagatcattgaaactgaaacaatccatacccgcggcgaaccggatagc
gagtatcaggtaacggttgaaccgcatcctcatcaaacgatcgagttaccggatctcgcc
cagagcggattgatcatgatagaaacagctccggataagatatccgagacagaagaagtt
cctccagcgccttccagaaggccgcgcagccggccccgtcgttcggtagaacctgctgct
gacaatgcagaacctctggtgcaagtggaaaccagagactga
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