Nocardia farcinica IFM 10152: NFA_46830
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Entry
NFA_46830 CDS
T00207
Symbol
deaD
Name
(GenBank) putative ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
3.6.4.13
]
Organism
nfa
Nocardia farcinica IFM 10152
Pathway
nfa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nfa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NFA_46830 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nfa03019
]
NFA_46830 (deaD)
03009 Ribosome biogenesis [BR:
nfa03009
]
NFA_46830 (deaD)
Messenger RNA biogenesis [BR:
nfa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NFA_46830 (deaD)
Ribosome biogenesis [BR:
nfa03009
]
Prokaryotic type
rRNA helicases
NFA_46830 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
HEM4
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
BAD59534
NIH_Japan:
nfa46830
UniProt:
Q5YQK7
LinkDB
All DBs
Position
4883259..4885067
Genome browser
AA seq
602 aa
AA seq
DB search
MSTNQVDSVPGDDDRDSGGAESGSGSAGPSFADLGIDDRILRAIADVGYESPSPIQAATI
PPLLDGADVVGLAQTGTGKTAAFAIPILMGLEVTGRQPRALVLAPTRELAIQVAEAFGRY
AAHMPGLHVLPIYGGQSYGVQLSGLRRGAHVVVGTPGRVIDHLEKGTLDLSQLQYLVLDE
ADEMLKMGFQEDVERILADTPREKQVALFSATMPAAIRKISKQYLREPVEITVKAKTQTN
TNITQRWVQVSHQRKLDALTRVLEVEPFEAMIIFVRTKQGTEELAEKLRARGFSAAAING
DIAQNQRERTIGQLKSGALDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTG
RAGRSGQALLFVAPRERHLLKAIERATRHPLEEMQLPSVEDVNAQRVSKFGDAITENLSS
ANLPLFRKLIEDYEREHNIPLVDIAAALAVGSYDGDNFFMEAEPEPERRERVPRERPARR
FDEERGGGSHHRATGTELATYRISVGKRHRVVPGAIVGAIANEGGLRRSDFGHISIRPDH
SLVELPAQLPAETLEALRRTRISGVLIQLQLDQGPPAQRAFSRGPRRDRDAGKRPERRKP
RS
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccaatcaggtcgacagcgttcctggcgacgacgacagggactcgggcggagcc
gaatccggttccggctcggccggcccgtccttcgccgacttgggcatcgatgaccgcatc
ctgcgggcgattgccgatgtcggttacgaatccccctcgccgatccaggcggcgaccatt
cccccactgctcgacggcgccgacgtcgtcggcctggcgcagaccggcaccggtaagacc
gccgcgttcgccatccccatcctgatgggcctcgaagtgaccggcaggcagccgcgcgcg
ctcgtgctcgcaccgacccgggaactggccatccaggtcgccgaggcgttcggccgctac
gccgcgcacatgcccggcctgcatgtgctgccgatctacggcggccagagctacggcgtg
cagctgtccgggctgcgccgcggcgcgcacgtcgtggtcggtacgcccggccgggtgatc
gaccacctggagaagggcaccctcgacctgtcccagctgcagtacctggtgctggacgag
gccgacgagatgctgaagatgggcttccaggaagacgtcgagcgcatcctcgccgacacc
ccgcgcgagaagcaggtggccctgttctcggccaccatgcccgcggcgatccggaagatc
tccaagcagtacctgcgcgagccggtcgagatcaccgtcaaggccaagacccagaccaac
accaacatcacccagcgctgggtgcaggtgtcgcatcagcggaaactcgacgcgctcacc
cgggtgctcgaggtggagccgttcgaggcgatgatcatcttcgtccgcaccaagcagggc
accgaggaactcgccgagaagctgcgcgcccgcggattctccgcggcggccatcaacggc
gacatcgcgcagaaccagcgcgagcgcaccatcggccagctcaagtccggcgcgctggac
atcctggtcgccaccgacgtcgccgcgcgcggcctggacgtcgaccgcatctcgcacgtg
gtcaactacgacatcccgcacgacaccgagtcctacgtgcaccgcatcggccgcaccggc
cgggccgggcgcagcgggcaggcgttgctgttcgtcgccccgcgcgagcggcatctgctc
aaggccatcgagcgcgccacccggcatccgctcgaggagatgcagctgcccagcgtggag
gacgtgaacgcgcagcgggtcagcaagttcggcgacgccatcaccgagaatctgtcctcg
gcgaacctgccgctgttccgcaagctcatcgaggactacgagcgcgagcacaacattccg
ctcgtcgacatcgcggccgcgctggccgtgggctcctacgacggcgacaacttcttcatg
gaggccgagccggaacccgaacggcgcgaacgtgttccgcgggagcggccggcccggcgg
ttcgacgaggaacgcggcggcggttcgcaccatcgggccaccggcaccgaactggccacc
taccggatcagcgtcggcaagcggcaccgggtggtgccgggcgcgatcgtcggcgccatc
gccaacgagggtggcctgcggcgcagcgatttcgggcacatcagcatccggcccgaccac
agcctggtcgagctgcccgcgcagctgcccgccgaaacgctggaggcgttgcggcgcacc
aggatcagcggcgtgctcatccagttgcagctggaccagggaccgcccgcgcagcgcgcg
ttcagccgcgggccgcggcgcgaccgggacgcgggcaaacgaccggagcggcgcaagccc
cgatcctga
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