Nocardia farcinica IFM 10152: NFA_49950
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Entry
NFA_49950 CDS
T00207
Symbol
uvrD
Name
(GenBank) putative ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
nfa
Nocardia farcinica IFM 10152
Pathway
nfa03420
Nucleotide excision repair
nfa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nfa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NFA_49950 (uvrD)
03430 Mismatch repair
NFA_49950 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nfa03400
]
NFA_49950 (uvrD)
Enzymes [BR:
nfa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NFA_49950 (uvrD)
DNA repair and recombination proteins [BR:
nfa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NFA_49950 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
NFA_49950 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PcrA_UvrD_tudor
ResIII
DEAD
Spore_YhcN_YlaJ
Motif
Other DBs
NCBI-ProteinID:
BAD59847
NIH_Japan:
nfa49950
UniProt:
Q5YPP4
LinkDB
All DBs
Position
complement(5211240..5213768)
Genome browser
AA seq
842 aa
AA seq
DB search
MDMTVVPQTTAPQTTPAGRSLAEQAQQRADDQARRRADRDRQRAEQVERLLDGLNPQQRA
AVVHAGSPLLIVAGAGSGKTAVLTRRIAYLLAARDVSPGQILAITFTNKAAAEMRERVTG
LVGPRAATMWVSTFHSSCVRILRMQAALLPGLNSNFSIYDADDSRRLLTMISRDLDIDTK
KYSARLLVTAISNLKNELIGPEQASADAESDESELPGLVARVYTEYQRRLRAANALDFDD
LIGETVALLQNHPQVAEYYRRRFRHVLVDEYQDTNHAQYVLVRELVGHHSAADDTEDAVP
PSELCVVGDADQSIYAFRGATIRNIEEFERDFPDAETILLEQNYRSTQNILSAANAVIAR
NEGRREKRLWTDSGEGDLIVGYVADNEHDEASFVAREIDRLVDQGEANYGDVAVFYRTNN
NSRALEEIFIRMGLPYKVVGGVRFYERKEVRDIVAYLRVLENPDDAVSLRRILNTPRRGI
GDRAEACVAVHAEQRGIGFAAALRDAAEGKVALLNTRAQRAIAGFLDLLEEIRAAGEQAD
ADFPDVGNVVEAVLDRTGYRAELEASDDPQDGARLDNLNELVSVAREFSSEAYNNAVAAR
EEGILPEQAEGEPDPGSLAAFLERVSLVADTDQIPDEGAGVVTMMTLHTAKGLEFPVVFV
TGWEDGQFPHMRALGDPTELAEERRLAYVGITRARQRLYLTRAVVRSGWGQPVSNPESRF
LQEIPDHLIEWRRLEPSPATRGIRKRGGDEGLERDWTRGDGWSEPRPGVRDRGPRRPAPG
GASRNNTNLVLAVGDRVSDDKYGLGRVVAADGFGPLATVTIDFGTAGKIRLIPQYSRTLV
KL
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atggacatgacggtggttccccagacgacggctccccagacgacgccggccggccgttcg
ctggccgagcaagcacagcagcgcgccgacgaccaggcccgacgccgcgccgaccgcgat
cggcagcgggccgaacaggtcgagcgcctgctcgacggcctcaacccgcagcagcgggcc
gcggtggtccacgcgggctcgccgctgttgatcgtcgcgggcgcgggctcgggcaagacc
gcggtgctcacccggcgcatcgcctacctgctcgccgcacgggacgtctcgcccggccag
atcctggcgatcaccttcaccaacaaggccgccgcggagatgcgggagcgcgtcacgggg
ctggtcggcccgcgcgcggccaccatgtgggtgtcgaccttccattccagttgcgtgcgg
atcctgcgcatgcaggcggcgctgctgcccggcctgaattccaatttctccatctacgac
gccgacgattcgcggcgattgctgaccatgatcagccgcgatctggatatcgacaccaag
aaatactccgcgcggctgctggtcacggccatctccaatctcaagaacgagctgatcggc
ccggagcaggctagcgccgacgccgagtccgacgaatccgagttgcccggcctggtggcc
cgcgtctacaccgaataccagcgcaggctgcgcgcggcgaacgcgctggatttcgacgac
ctgatcggcgagaccgtcgccctgttgcagaaccacccgcaggtcgccgagtactaccgc
cgccggttccggcacgtgctggtcgacgagtaccaggacaccaaccacgcgcagtacgtg
ctggtgcgcgaactcgtcggacatcacagcgcggcggacgacaccgaggacgcggtgccg
ccgagcgaactgtgcgtggtgggcgacgccgaccagtcgatctacgccttccgcggggcg
accatccgcaacatcgaggaattcgagcgcgatttccccgacgcggagaccattctgctc
gagcagaactaccgctccacccagaacatcctgtccgccgccaacgcggtgatcgcccgc
aacgagggcaggcgcgagaagcggctgtggaccgattcgggcgagggcgacctgatcgtc
ggctacgtcgccgacaacgagcacgacgaggcctccttcgtcgccagggagatcgatcgc
ctggtcgaccagggcgaggcgaactacggcgacgtcgcggtgttctatcgcaccaacaac
aactcccgtgcgctggaggagatcttcatccgcatggggctgccgtacaaggtggtcggc
ggcgtgcgcttctacgagcgcaaggaggtccgcgacatcgtggcctacctgcgggtgctg
gagaaccccgacgacgcggtcagcctgcgccgcattctcaacaccccgcgccgcggtatc
ggtgaccgggccgaagcctgcgtcgcggtgcacgccgaacagcgcggcatcggtttcgcc
gccgcgctgcgcgacgccgccgagggcaaggtggcactgctcaacacccgtgcccagcgc
gccatcgccgggttcctcgacctgctcgaagagatccgggccgccggtgagcaggccgac
gccgacttccccgatgtcggcaacgtggtggaagcggtgctcgaccgcaccggctaccgc
gccgaactggaagcctccgacgatccgcaggacggcgcccggctcgacaacctgaacgaa
ctggtcagcgtggcacgggaattcagctccgaggcctacaacaacgcggtcgccgcccgc
gaggagggcatcctgcccgaacaggccgagggtgaacccgatcccggctcgctggcggcc
ttcctcgagcgggtctcgctggtcgccgacaccgaccagatccccgacgagggcgccggg
gtggtcaccatgatgaccctgcacaccgccaagggcctggagttcccggtggtcttcgtg
accggctgggaggacgggcagttcccgcacatgcgcgcgctgggcgatcccaccgagctg
gccgaggaacgcaggctcgcctacgtcggcatcacccgggccaggcagcggctgtatctg
acccgggcggtggtccgctccggctggggccagccggtgtcgaacccggaatcccggttc
ctgcaggagattcccgaccacctgatcgagtggcgcaggctggagccttcgcccgccacc
cgcggcatccgtaagcgtggcggcgacgaggggctggagcgggactggacccgcggtgac
ggctggtccgagccgcgtcccggggtgcgcgaccgcggtccgcgccggcccgcgccgggc
ggggcgagccgcaacaacaccaatctggtgctcgccgtgggcgaccgggtcagcgacgac
aagtacgggctgggccgggtggtcgccgccgacgggttcgggccgctggccaccgtcacg
atcgatttcggcacggcgggcaagatccggctcatcccgcagtacagccggaccctggtc
aagctctga
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